I am trying to run rebuild_gca_atlas to create an atlas from my segmented vervet sample.  I’m pretty sure I’ve got everything set up correctly, but am getting an error:

ERROR: mri_ca_train: talairach.xfm not found in seg_edited.mgz

I’m using vervet (primte) MRIs, so I didn’t think a talairach transform for my subjects would be useful.  Also, it seems that this script points at seg_edited.mgz as a directory, even though I have it set up in my directory as a file.

Kevin Scheibel

k.scheibel@ucla.edu