Dear freesurfers,
I ran the retinotopy pipline (like preproc-sess, mkanalysis-sess, Selxavg3-sess) and now I want to view the results with tksurfer.
When I call
tksurfer <subject> <hemisphere> inflated and try to overlay the reall.nii.gz and imag.nii.gz, I need to choose a registration file.
I don't see any registration file in the eccen or polar folder, but in the '/Sess/bold' folder I see the
''init.register.dof6.dat',
'register.dof6.dat.mincost',
'register.dof6.dat.param',
'register.dof6.dat.sum',
'register.dof6.dat~'
and some other files. I am not sure whether the ''init.register.dof6.dat' is the right one to choose. Or did I miss some steps?
Also, I am wondering what do the angle.nii, angle.masked.nii and fieldsign.nii mean.
Thank you so much!
Zoe