Did you check whether there was something else attached? Eg, a big piece
of skull, etc.?


On 04/19/2017 01:23 PM, miracle ozzoude wrote:
> Hello Doug,
> No, the cerebellum has been removed.
> Best,
> Paul
>
> On Wed, Apr 19, 2017 at 1:13 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
>     Did you check to see whether cerebellum as still attached in the
>     wm.mgz
>     file?
>
>
>     On 04/18/2017 09:06 PM, miracle ozzoude wrote:
>     >
>     > ---------- Forwarded message ----------
>     > From: *miracle ozzoude* <miracooloz@gmail.com <mailto:miracooloz@gmail.com>
>     > <mailto:miracooloz@gmail.com <mailto:miracooloz@gmail.com>>>
>     > Date: Mon, Apr 17, 2017 at 8:40 AM
>     > Subject: fix topology problem
>     > To: Douglas N Greve <freesurfer@nmr.mgh.harvard.edu
>     <mailto:freesurfer@nmr.mgh.harvard.edu>
>     > <mailto:freesurfer@nmr.mgh.harvard.edu
>     <mailto:freesurfer@nmr.mgh.harvard.edu>>>
>     >
>     >
>     > Hello freesurfer,
>     > I am running recon-all on a scan and for the past 4 days, it hasn't
>     > finished the fix topology step of recon-all. I have attached the
>     > recon.log in the email. Thanks
>     > Best,
>     > Paul
>     >
>     >
>     >
>     >
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>     --
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center
>     greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
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>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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