Dear Bruce,

Thank you for your prompt response. I have 2 groups & 40 subjects in each groups in my study. I am using freesurfer and various other software for analysis. I found that the template available for registration either western or Chinese. There is no template available for Indian brain population. Therefore we want to develop a template specific to our population. And we have created templates using different software and want to compare the result with default template (western brain template) and our template. I need your help how to use this template in freesurfer. As you mentioned in the previous mail I will try with training utility (mri_ca_train). Can I get any user guide to know details about it?

Thank you
Ramesh

On Thu, Jan 11, 2018 at 11:07 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi Ramesh

what are you trying to achieve? Our segmentation tools use their own format as they need information not contained in most standard images, so it won't be easy to get it into that format unless you use our training utility (mri_ca_train)

cheers
Bruce

On Thu, 11 Jan 2018, Ramesh Babu wrote:

Dear experts, 
I have analysed T1 data using Freesurfer. Now we have created atlas, template & tissue probability
map using different methods and softwares. I need your help to use template in freesufer, so that we
can compare with default template and our template. Please help me to put these images in
appropriate folders in Freesurfer.


Thank you 
RB



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