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Dear FreeSurfer experts,

I have a general question, if i have a parcellation(an annotation file e.g aparc.annot which is the output of FreeSurfer) is FreeSurfer able to calculate the functional connectivity between the regions(parcels)  using rs-fMRI data?

I mean can I have a 68*68 matrix showing the functional connectivity between each pair of regions(parcels) at the end?

I would be grateful if u could help me.

best regards,

Maedeh

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