recon-all -s subj -i /home/ovl/Desktop/freesurferdicom/subj/T1/51129
Subject Stamp: freesurfer-Linux-centos6_x86_64-dev-20131217
Current Stamp: freesurfer-Linux-centos6_x86_64-dev-20131217
INFO: SUBJECTS_DIR is /usr/local/fs5.3/freesurfer/subjects
Actual FREESURFER_HOME /usr/local/fs5.3/freesurfer
Linux Wild-Dog-Performance 3.2.0-56-generic #86-Ubuntu SMP Wed Oct 23 09:20:45 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
/usr/local/fs5.3/freesurfer/subjects/subj
mri_convert /home/ovl/Desktop/freesurferdicom/subj/T1/51129 /usr/local/fs5.3/freesurfer/subjects/subj/mri/orig/001.mgz
mri_convert /home/ovl/Desktop/freesurferdicom/subj/T1/51129 /usr/local/fs5.3/freesurfer/subjects/subj/mri/orig/001.mgz
$Id: mri_convert.c,v 1.206 2013/11/12 03:15:51 greve Exp $
reading from /home/ovl/Desktop/freesurferdicom/subj/T1/51129...
Starting DICOMRead2()
dcmfile = /home/ovl/Desktop/freesurferdicom/subj/T1/51129
dcmdir = /home/ovl/Desktop/freesurferdicom/subj/T1
Ref Series No = 302
Found 167 files, checking for dicoms
Found 165 dicom files in series.
First Sorting
Computing Slice Direction
Vs: -0.999557 0.0285859 -0.00787544
Vs: -0.99956 0.028586 -0.00787546
Second Sorting
Counting frames
nframes = 1
nslices = 165
ndcmfiles = 165
PE Dir = ROW (dicom read)
TransferSyntaxUID: --1.2.840.10008.1.2.4.70--
ERROR: the pixel data cannot be loaded as it is JPEG compressed.
(Transfer Syntax UID: 1.2.840.10008.1.2.4.70)
jpegUID: --1.2.840.10008.1.2.4--
Linux ovl-Wild-Dog-Performance 3.2.0-56-generic #86-Ubuntu SMP Wed Oct 23 09:20:45 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s subj exited with ERRORS at Sun Dec 22 21:22:11 CST 2013
For more details, see the log file /usr/local/fs5.3/freesurfer/subjects/subj/scripts/recon-all.log
To report a problem, see
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting