Hi Saurabh

I'm not sure I understand. This is the purpose of recon-all - to generate morphomological models, including the thickness estimates in lh.thickness. Is that would you mean? BTW: I wouldn't look at thickness in the hippocampus, the results will be unreliable due to all the internal structure in the hippocampus that is not well-resolved at current resolutions.

cheers
Bruce

On Wed, 26 Mar 2014, Saurabh Thakur wrote:

Hello Bruce,

I am referring to link

http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness

to calculate the cortical thickness of particular area such as Left
hippocampus for our own data set.

But i am looking for forward to generate lh.thickness file in freesurfer for
own data set which can be used as overlay. (Used for surface to surface
overlay)

Can u suggest how to generate lh.thickness file for my own data using
freesurfer...?

Thanks in advanced.

cheers
Saurabh Thakur,






On Tue, Mar 11, 2014 at 10:28 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote:
      try configure->functional overlay or something like that after
      loading the thickness into a functional overlay
      On Tue, 11 Mar 2014, Saurabh Thakur wrote:

            I am referring one paper.
            It mentioned about the freesurfer and cortical
            thickness they hv got in
            tksurfer.

            I m just want to know how to get that done in
            tksurfer.

            I hv attached that paper for the reference.

            cheers
            Saurabh Thakur,






            On Tue, Mar 11, 2014 at 7:14 AM, Bruce Fischl
            <fischl@nmr.mgh.harvard.edu>
            wrote:
                  what is it that you want to histogram? If the
            thickness,
                  tksurfer will do
                  this for you if you load it as an overlay. Or
            you can read it
                  into matlab
                  and show it there

                  On Tue, 11 Mar 2014, Saurabh Thakur
                  wrote:

                  > Hello Freesurfer Expert,
                  >
                  > Can anyone help me with histogram plotting
            of different
                  surfaces in
                  > tksurfer.
                  >
                  > I looking to calculate the thickness of
            cortex.
                  >
                  > Thanks in advance,
                  >
                  >
                  > Saurabh Thakur,
                  >
                  >
                  >
                  >
                  >
                  >
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