I have run:

1)

mris_preproc --fsgd GROUP1.fsgd --target fsaverage --hemi rh --meas thickness --out rh.GROUP1.thickness.00.mgh
mri_surf2surf --hemi rh --s fsaverage --sval rh.GROUP1.thickness.00.mgh --fwhm 10 --cortex --tval rh.GROUP1.thickness.10B.mgh

2)

mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --surface fsaverage rh --glmdir Age.wls --nii.gz --fsgd g1v1_Age.fsgd --C intercept.mtx --C slope.mtx --pvr rh.GROUP1.thickness.10B.mgh

The command line is correct?

My concern is on the fsgd file.

I have 

GroupDescriptorFile 1
Title All
Class Main
Variables thickness
Input ADNI0XX_GROUP1 Main ????
Input ADNI0XY_GROUP1 Main ????
Input ADNI0YX.GROUP1 Main ????
...

What I should add after Main if I would like to assess the vertex by vertex correlation between FC (between seed and target vertex) and thickness (in the target vertex)?

Should I add the path where is contained rh.thickness.mgh of each subject?

Please give me an help because I did not find these information using --help or mail list.

Thanks

Stefano

Il 3 febbraio 2018 alle 19.55 Douglas Greve <greve@nmr.mgh.harvard.edu> ha scritto:

Yes, use the --pvr option to mri_glmfit (per-voxel regressor). Search through the mail archives for an example on how to use it

Hi list,

Is there a way to obtain a map that report the "vertex by vertex" correlation between the FC (obtained by FS-FAST) and cortical thickness?

Thanks

Stefano

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.