发件人: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> 代表 Douglas N. Greve <dgreve@mgh.harvard.edu>
发送时间: 2025年1月6日 9:13
收件人: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
主题: Re: [Freesurfer] How to Plot Surface with ROI Boundaries Using Harvard-Oxford Brain Atlas?

I'm not sure what you are trying to do. The HO atlas is volume-based, isn't it?

On 1/3/2025 4:41 PM, Zeng, Xinglin wrote:

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Dear Community,

I am currently working on visualizing ROI boundaries on the brain surface using the Harvard-Oxford brain atlas. My goal is to generate a surface plot that overlays ROI boundaries from the atlas in a clear and accurate manner.
I also tried visualizing in Freeview, connectome_workbench, and I could plot the surface but I was unable to plot the boundaries correctly.
Specific challenges I’m facing:
I don’t know how to combine the ROI boundaries with a functional surface overlay while keeping the boundaries visible.

image800×330 95 KB

I would really appreciate any tips, example commands, or references to similar workflows. Thank you in advance for your help!
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