-------------------------------------------------------------- selxavg3-sess logfile is /autofs/space/uriline_003/users/projects/OCD_NM/walker_pedersen/scripts/preproc/firstLevReg/log/selxavg3-sess-cond-cond_fsavSurf_l_sm5-210616113234.log -------------------------------------------------------------- selxavg3-sess log file /autofs/cluster/neuromod/programs/freesurfer_7.1.1/freesurfer/fsfast/bin/selxavg3-sess -no-preproc -s sub-101KI_ses-bld1 -d /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast -analysis cond_fsavSurf_l_sm5 selxavg3-sess 7.1.1 uid=5152131(wsp6) gid=5152131(wsp6) groups=5152131(wsp6),1623(neuromod),1780(neuromec) /autofs/space/uriline_003/users/projects/OCD_NM/walker_pedersen/scripts/preproc/firstLevReg Linux tonetti.nmr.mgh.harvard.edu 3.10.0-1160.31.1.el7.x86_64 #1 SMP Thu Jun 10 13:32:12 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed Jun 16 11:32:34 EDT 2021 ------------------------------------------- 1/1 /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1 Wed Jun 16 11:32:35 EDT 2021 anadir = /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5 DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1 sub-101KI_ses-bld1 Update needed /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/sxa3.config.txt MLF is /tmp/selxavg3-sess-109844.m ------------------------------------------ % Wed Jun 16 11:32:34 EDT 2021 % /autofs/space/uriline_003/users/projects/OCD_NM/walker_pedersen/scripts/preproc/firstLevReg % cond_fsavSurf_l_sm5 which fast_selxavg3 which fast_ldanaflac which MRIread fast_selxavg3b('/autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/sxa3.config.txt') if(~fast_fileexists('/tmp/selxavg3-sess-109844.ok')); quit; end %-------------------------------- quit; ------------------------------------------ ------------------------------------------ ------- matlab output -------------------- MATLAB is selecting SOFTWARE OPENGL rendering. < M A T L A B (R) > Copyright 1984-2020 The MathWorks, Inc. R2020b (9.9.0.1467703) 64-bit (glnxa64) August 26, 2020 To get started, type doc. For product information, visit www.mathworks.com. >> >> >> >> /autofs/cluster/neuromod/programs/freesurfer_7.1.1/freesurfer/fsfast/toolbox/fast_selxavg3.m >> /autofs/cluster/neuromod/programs/freesurfer_7.1.1/freesurfer/fsfast/toolbox/fast_ldanaflac.m >> /autofs/cluster/neuromod/programs/freesurfer_7.1.1/freesurfer/matlab/MRIread.m >> >> >> starting fast_selxavg3b #@# sub-101KI_ses-bld1 ############################### /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1 ------------------------- fast_selxavg3b.m 7.1.1 ------------------------- outtop = /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast Extension format = nii.gz INFO: key nSliceGroups unrecognized, line 12, skipping 1 CX.mat 2 NOShock_1.mat 3 eCS+1.mat 4 eCS+2.mat 5 eCS-atCS+1.mat 6 eCS-atCS+2.mat 7 lCS+1.mat 8 lCS+2.mat 9 lCS-atCS+1.mat 10 lCS-atCS+2.mat 11 omittedSck_1.mat 12 shock.mat Excluding 1 points nruns = 1 autostimdur = outanadir = /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5 Excluding 1 points parfiles condition id list: 1 2 3 4 5 6 7 8 9 10 11 12 No mask used Found 163842/163842 (100.0) voxels in mask 1 Creating Design Matrix ... creation time = 0.005 sec DoMCFit = 0 ntptot = 315, nX = 28, DOF = 287 Saving X matrix to /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/Xtmp.mat XCond = 73.0378 (normalized) Computing compensation for resdual AR1 bias 1 -0.5 -0.491743 (t=0.025211) 2 -0.25 -0.266656 (t=0.03165) 3 0 -0.0471812 (t=0.037632) 4 0.25 0.163959 (t=0.043537) 5 0.5 0.361492 (t=0.053281) AR1 Correction M: 0.065498 1.16906 Computing contrast matrices OLS Beta Pass run 1 t= 0.0 reading data ... 2.60893 Global Mean 521.20 Global In-Mask Mean = 521.204 (569.694) Rescale Target = 100 RescaleFactor = 0.191863 OLS Residual Pass run 1 t= 0.0 reading data ... 2.65821 Saving rho1 Smoothing ACF /autofs/cluster/neuromod/programs/freesurfer_7.1.1/freesurfer/bin/mri_fwhm --mask /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/mask.nii.gz --i /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/rho1mn.nii.gz --o /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only /autofs/cluster/neuromod/programs/freesurfer_7.1.1/freesurfer/bin/mri_fwhm --mask /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/mask.nii.gz --i /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/rho1mn.nii.gz --o /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only: Segmentation fault voxelvolume 1 mm3 Loading mask /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/mask.nii.gz Search region is 163842 voxels = 163842.000000 mm3 Smoothing input by fwhm=20.000000, gstd=8.493218 ERROR: /autofs/cluster/neuromod/programs/freesurfer_7.1.1/freesurfer/bin/mri_fwhm --mask /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/mask.nii.gz --i /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/rho1mn.nii.gz --o /autofs/cluster/neuromod/NIFTI/OCD_NM/derivatives/fsfast/sub-101KI_ses-bld1/cond/cond_fsavSurf_l_sm5/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only ans = 139 >> ------------------------------------------ ERROR: fast_selxavg3() failed\n