Dear List<div><br></div><div>Just to say that the below error turned out to be a problem with my pathdef.m file. </div><div><br></div><div>Very best, </div><div><br></div><div>Lisa</div><div> <br><br><div class="gmail_quote">
On Mon, Apr 4, 2011 at 4:24 PM, Lisa Ronan <span dir="ltr">&lt;<a href="mailto:lisa.ronan@gmail.com">lisa.ronan@gmail.com</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Dear List<div><br></div><div>I have recently come up agains the same problem as described below, namely the error when I compute lGI reads</div><div class="im"><div><br></div><div>&gt;&gt;reading filled volume...</div><div>
closing volume...</div>
<div>??? Undefined function or method &#39;fspecial&#39; for input arguments of type &#39;char&#39;.</div><div>Error in ==&gt; make_outer_surface at 31<br>Gaussian = fspecial(&#39;gaussian&#39;,[2 2],1);<br><br></div></div>
<div>
ERROR: make_outer_surface did not create output file ....</div><div><br></div><div>I have tried re-running the subject (as recommended below), as well as looking at any output from the mris_compute_lgi -debug flag directly, but the error is the same (Note I am trying to process subjects on a linux computer, and have verified that the same subject runs successfully on a Mac). </div>

<div><br></div><div>I&#39;d appreciate any suggestions you might have,</div><div><br></div><div>Thanks in advance,</div><div><br></div><font color="#888888"><div>Lisa</div></font><div><div></div><div class="h5"><div><br>
<div class="gmail_quote">On Wed, Sep 24, 2008 at 7:18 PM, Martin Kavec <span dir="ltr">&lt;<a href="mailto:martin.kavec@gmail.com" target="_blank">martin.kavec@gmail.com</a>&gt;</span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Jenifer,<br>
<br>
I don&#39;t know what the error exactly means, but sometimes just re-running the<br>
analysis helps.<br>
<br>
Best,<br>
<font color="#888888"><br>
Martin<br>
</font><div><div></div><div><br>
On Wednesday 24 September 2008 19:24:40 Juranek, Jenifer wrote:<br>
&gt; Hi,<br>
&gt; Encountering some difficulties with LGI on a RHEL4 box (64bit) with MATLAB<br>
&gt; v7.6.0.324 (R2008a) installed. Subject was processed under fsv405. Specific<br>
&gt; error is pasted below:<br>
&gt;<br>
&gt; Any suggestions to correct my error?<br>
&gt;<br>
&gt; Thanks,<br>
&gt; Jenifer<br>
&gt;<br>
&gt; &gt;&gt; reading filled volume...<br>
&gt;<br>
&gt; closing volume...<br>
&gt; ??? Undefined function or method &#39;fspecial&#39; for input arguments of type<br>
&gt; &#39;char&#39;.<br>
&gt;<br>
&gt; Error in ==&gt; make_outer_surface at 31<br>
&gt; Gaussian = fspecial(&#39;gaussian&#39;,[2 2],1);<br>
&gt;<br>
&gt;<br>
&gt; ERROR: make_outer_surface did not create output file<br>
&gt; &#39;tmp-mris_compute_lgi-lh.pial/lh.pial-outer&#39;! Linux localhost.localdomain<br>
&gt; 2.6.9-5.ELsmp #1 SMP Wed Jan 5 19:29:47 EST 2005 x86_64 x86_64 x86_64<br>
&gt; GNU/Linux<br>
&gt;<br>
&gt; recon-all exited with ERRORS at Wed Sep 24 11:51:01 CDT 2008<br>
&gt;<br>
&gt; [jjuranek@localhost jjuranek_fsv405]$<br>
&gt;<br>
&gt;<br>
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