Just trying out the QAtools and I notice that there are a number of "(standard_in) 1: syntax error" reports for each subcortical label:

checking subcortical label: Endosteum, . +/- .

(standard_in) 1: syntax error

(standard_in) 1: syntax error

(standard_in) 1: syntax error

(standard_in) 1: syntax error

(standard_in) 1: syntax error

As best as I can tell its in some bc calculations that are being done and I assume these errors are why there are no aseg reports made. All the other calculations and snapshots seem to work just fine. I am running FreeSurfer 5.3 and QAtools 1.1 on Ubuntu 12.04. Thanks in advance. 

Cheers,

-Morgan