Hi, <br>
I would like to analyse my data without using the mri_glmfit, because
it is not flexible enough for my current purposes. But I would like to
use mris_preproc and surf2surf in order to get the data into common
space. However, when executing the mris_preproc I am required to
specify a FSGD file, i.e. a design (variables, regressors etc.). I am
wondering if that influences the processing of the data in any way -
before mri_glmfit of course. So, what I am doing is just loading the
?h.FSGDF.thickness.10.mgh&nbsp; file that is the output of the
surf2surf script, into Matlab and doing the statistics there. However,
I am worried that the mris_preproc script may be using the information
from the FSGD file to alter the measurements in any way. Of course, I
turn of the reshape that is default in surf2surf. Are there any other
options I should turn off or change?<br>
<br>
Thank you!<br>
<br>
-- <br>yours,<br>LMR