can you send me
/Users/marc/Desktop/brainscan/DICOM/PA000000/ST000000/SE000001/IM000000
? Also, what version of FS are you using?
On 12/05/2015 01:39 PM, Marc Callison wrote:
> Yes I don't think that is it because it processes some of the files.
> Not sure though.
>
> I did try the mri_convert command but I'd have to run it hundreds or
> times unless there is some way to make it loop through all the files
> in the different folders.
>
>
>
> On Saturday, December 5, 2015, Douglas Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
> Did you see the question "has this file been anonymized?" ?
>
> On 12/5/15 10:04 AM, Marc Callison wrote:
>> Good day,
>>
>> I'm getting the following error when I try to convert my DICOM
>> files. Some of the files do not have the issue, but others do.
>> The error is below.
>>
>> WARNING: file
>> /Users/marc/Desktop/brainscan/DICOM/PA000000/ST000000/SE000001/IM000000
>> does not contain a Siemens ASCII header
>>
>> has this file been anonymized?
>>
>> ERROR: cannot unpack mosiacs without ASCII header
>>
>> Darwin Marcs-MacBook-Air.local 15.0.0 Darwin Kernel Version
>> 15.0.0: Sat Sep 19 15:53:46 PDT 2015;
>> root:xnu-3247.10.11~1/RELEASE_X86_64 x86_64
>>
>>
>> recon-all -s my_brain exited with ERRORS at Fri Dec 4 20:02:27
>> CST 2015
>>
>>
>> For more details, see the log file
>> /Applications/freesurfer/subjects/my_brain/scripts/recon-all.log
>>
>> To report a problem, see
>> http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>
>>
>>
>> I need help figuring out how to solve this if anyone can. I'd
>> really appreciate it.
>>
>>
>> Thanks,
>>
>> Marc
>>
>>
>>
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>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
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