thank you so much for your quick reply.

yes - I saw this error after I sent you the error log.

I checked the paradigm file, corrected it and rerun everything.

now this error is gone but I still get the following:

Error using svd

Input to SVD must not contain NaN or Inf.

Error in cond (line 36)

s = svd(A);

Error in fast_selxavg3 (line254)

XCond = cond(XtX);

>> - - - - - — - - — - - — - — -

EROOR: fast_selxavg3() failed\n

Your help is much appreciated

On Dec 9, 2015, at 1:57 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

Did you see the error description:

ERROR:
/space/mdeh5/1/halgdev/projects/christina/FSFAST/Project/NC211_fmri_060515/Sess01/bold/004/oddeven.par
is not correctly formatted. Line 19 only has 0 items

did you check this file?

On 12/09/2015 12:38 PM, Christina Pressl wrote:

Dear Freesurfer Experts,

I am having trouble with selxavg3-sess and was wondering if you could
maybe help me resolving the issue (error log attached)

I ran

#preproc-sess –s Sess01 –surface fsaverage lhrh –mni305 –fwhm 5 –per-run

and the following commands for lh, rh and mni305

#mkanalysis-sess –fsd bold –stc up -surface fsaverage lh -fwhm 5
-event-related -paradigm oddeven.par -nconditions 3 -spmhrf 0 -TR 2
-refeventdur 10.750 -nskip 4 –mcextreg -polyfit 2 -analysis
oddeven.sm5.lh

#mkcontrast-sess –analysis oddeven.sm5.lh –contrast face-vs-object –a
1 –c 2 –c 3

#mkcontrast-sess –analysis oddeven.sm5.lh –contrast face-vs-fix –a 1 –c 0

Thank you very much.

Christina

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.