On Feb 17, 2022, at 18:44, Pusok, Anna <anna.pusok@yale.edu> wrote:

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Hi,

Sorry but this did not fix the issues- could I ask you to help with Freesurfer? I tried to get it work many times, with no success and what you recommended also did not work.

Thank you.

---

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Tim Schäfer <ts+ml@rcmd.org>
Sent: Thursday, February 17, 2022 2:10 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] FreeSurfer Issue

 

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Dear Anna,

You should use 'setenv' (for tcsh and related shells) or 'export' (for BASH) when defining environment variables, as listed here:

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E.g.:

    setenv FREESURFER_HOME /Applications/freesurfer/7.2.0

You should also source (instead of executing) the SetUpFreeSurfer.csh script:

    source $FREESURFER_HOME/SetUpFreeSurfer.csh

Best,

Tim

> On 02/17/2022 5:32 PM Pusok, Anna <anna.pusok@yale.edu> wrote:
> 
>  
> External Email - Use Caution        
> 
> Hi there,
> I hope this email finds you well!
> I ran into some issues when I tried to use freesurfer. This is the error message I get in my terminal. Could you help me with this issue? If we could set up a Zoom meeting to discuss the issue, that would be helpful as well!
> Thank you,
> Anna
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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--
Dr. Tim Schäfer
Postdoc Computational Neuroimaging
Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy
University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany

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