Last login: Wed Jul 14 16:21:32 on ttys002 -------- freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Users/heatherreynolds/Applications/freesurfer FSFAST_HOME /Users/heatherreynolds/Applications/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /Users/heatherreynolds/Applications/freesurfer/subjects MNI_DIR /Users/heatherreynolds/Applications/freesurfer/mni FSL_DIR /usr/local/fsl geoff-imac:~ heatherreynolds$ recon-all -subject MCI31 -i /Users/heatherreynolds/Desktop/MCI/h00031_T1MR_R.img -all Subject Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0 Current Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0 INFO: SUBJECTS_DIR is /Users/heatherreynolds/Applications/freesurfer/subjects Actual FREESURFER_HOME /Users/heatherreynolds/Applications/freesurfer Darwin geoff-imac.smb.man.ac.uk 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31 \n mri_convert /Users/heatherreynolds/Desktop/MCI/h00031_T1MR_R.img /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig/001.mgz \n mri_convert /Users/heatherreynolds/Desktop/MCI/h00031_T1MR_R.img /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig/001.mgz $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from /Users/heatherreynolds/Desktop/MCI/h00031_T1MR_R.img... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Thu Jul 15 11:43:48 BST 2010 Found 1 runs /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig/001.mgz WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. \n cp /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig/001.mgz /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/rawavg.mgz \n /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31 \n mri_convert /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/rawavg.mgz /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig.mgz --conform \n mri_convert /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/rawavg.mgz /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig.mgz --conform $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) Original Data has (1, 1, 1) mm size and (256, 256, 150) voxels. Data is conformed to 1 mm size and 256 voxels for all directions changing data type from 3 to 0 (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig.mgz... \n mri_add_xform_to_header -c /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/transforms/talairach.xfm /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig.mgz /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/orig.mgz \n INFO: extension is mgz #-------------------------------------------- #@# Nu Intensity Correction Thu Jul 15 11:44:00 BST 2010 \n mri_nu_correct.mni --i orig.mgz --o nu.mgz --n 2 \n /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri /Users/heatherreynolds/Applications/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.7.2.2 2009/05/04 16:16:27 nicks Exp $ Darwin geoff-imac.smb.man.ac.uk 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 Thu Jul 15 11:44:00 BST 2010 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nschmans@W0084482 (i686-apple-darwin8.8.1) on 2006-10-03 at 21:43:56 tmpdir is ./tmp.mri_nu_correct.mni.39904 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.39904/nu0.mnc mri_convert orig.mgz ./tmp.mri_nu_correct.mni.39904/nu0.mnc $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from orig.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to ./tmp.mri_nu_correct.mni.39904/nu0.mnc... -------------------------------------------------------- Iteration 1 Thu Jul 15 11:44:05 BST 2010 nu_correct -clobber ./tmp.mri_nu_correct.mni.39904/nu0.mnc ./tmp.mri_nu_correct.mni.39904/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.39904/0/ [heatherreynolds@geoff-imac.smb.man.ac.uk:/Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/] [2010-07-15 11:44:06] running: /Users/heatherreynolds/Applications/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.39904/0/ ./tmp.mri_nu_correct.mni.39904/nu0.mnc ./tmp.mri_nu_correct.mni.39904/nu1.imp Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Number of iterations: 50 CV of field change: 0.00096601 [heatherreynolds@geoff-imac.smb.man.ac.uk:/Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/] [2010-07-15 11:44:34] running: /Users/heatherreynolds/Applications/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.39904/nu0.mnc ./tmp.mri_nu_correct.mni.39904/0//template.mnc Transforming slices:......................................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Transforming slices:................................................................................................................................................................................................................................................................Done -------------------------------------------------------- Iteration 2 Thu Jul 15 11:44:38 BST 2010 nu_correct -clobber ./tmp.mri_nu_correct.mni.39904/nu1.mnc ./tmp.mri_nu_correct.mni.39904/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.39904/1/ [heatherreynolds@geoff-imac.smb.man.ac.uk:/Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/] [2010-07-15 11:44:38] running: /Users/heatherreynolds/Applications/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.39904/1/ ./tmp.mri_nu_correct.mni.39904/nu1.mnc ./tmp.mri_nu_correct.mni.39904/nu2.imp Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Number of iterations: 3 CV of field change: 0.000914142 [heatherreynolds@geoff-imac.smb.man.ac.uk:/Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/] [2010-07-15 11:44:40] running: /Users/heatherreynolds/Applications/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.39904/nu1.mnc ./tmp.mri_nu_correct.mni.39904/1//template.mnc Transforming slices:......................................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Transforming slices:................................................................................................................................................................................................................................................................Done mri_convert ./tmp.mri_nu_correct.mni.39904/nu2.mnc nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.39904/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from ./tmp.mri_nu_correct.mni.39904/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... Thu Jul 15 11:44:48 BST 2010 mri_nu_correct.mni done #-------------------------------------------- #@# Talairach Thu Jul 15 11:44:49 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri \n talairach_avi --i nu.mgz --xfm transforms/talairach.auto.xfm \n /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri /Users/heatherreynolds/Applications/freesurfer/bin/talairach_avi --i nu.mgz --xfm transforms/talairach.auto.xfm $Id: talairach_avi,v 1.4.2.1 2009/07/30 19:22:07 nicks Exp $ Darwin geoff-imac.smb.man.ac.uk 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 Thu Jul 15 11:44:49 BST 2010 -------------------------------------------- mri_convert nu.mgz talsrcimg.img $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from nu.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to talsrcimg.img... Analyze Output Matrix -1.000 0.000 0.000 129.000; 0.000 0.000 1.000 -156.000; 0.000 -1.000 0.000 144.000; 0.000 0.000 0.000 1.000; -------------------- INFO: set hdr.hist.orient to -1 -------------------------------------------- mpr2mni305 talsrcimg Thu Jul 15 11:44:51 BST 2010 /Users/heatherreynolds/Applications/freesurfer/bin/mpr2mni305 talsrcimg $Id: mpr2mni305,v 1.3.2.1 2009/07/30 19:21:45 nicks Exp $ target=711-2C_as_mni_average_305 --------------------------------------------------------------------- analyzeto4dfp talsrcimg -O0 -y --------------------------------------------------------------------- $Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ Thu Jul 15 11:44:52 2010 Writing: talsrcimg.4dfp.hdr $Id: analyzeto4dfp.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ Reading: talsrcimg.hdr header size 348 bytes hdr.dime.datatype offset=70 value=2 hdr.dime.bitpix offset=72 value=8 hdr.hist.orient offset=252 value=-1 dimensionality 4 dimensions 256 256 256 1 Reading: talsrcimg.img Writing: talsrcimg.4dfp.img Writing: talsrcimg.4dfp.ifh ifh2hdr talsrcimg -r0to255 ori=2 --------------------------------------------------------------------- gauss_4dfp talsrcimg 1.1 --------------------------------------------------------------------- $Id: gauss_4dfp.c,v 1.2.2.1 2009/05/15 21:44:49 nicks Exp $ Reading: talsrcimg.4dfp.img Writing: talsrcimg_g11.4dfp.img image dimensions 256 256 256 padded to 288 288 288 processing volume 1$Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ Thu Jul 15 11:45:06 2010 Writing: talsrcimg_g11.4dfp.hdr Writing: talsrcimg_g11.4dfp.ifh including: talsrcimg.4dfp.img.rec in talsrcimg_g11.4dfp.img.rec --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 none talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 t4_read: talsrcimg_to_711-2C_as_mni_average_305_t4 read error t4_read: transform initialized to I4 rotation matrix determinant 1.000000 image alignment mode 4355 decimal 1103 hex -7.5000 -45.0000 -45.0000 8027.6899 15.6290 0.0000 -45.0000 -45.0000 8436.8096 15.5867 7.5000 -45.0000 -45.0000 8117.7036 15.5438 -7.5000 -37.5000 -45.0000 8446.6533 15.6091 0.0000 -37.5000 -45.0000 8865.3027 15.5775 7.5000 -37.5000 -45.0000 8531.8887 15.5457 -7.5000 -30.0000 -45.0000 9077.9844 15.6863 0.0000 -30.0000 -45.0000 9526.5459 15.6621 7.5000 -30.0000 -45.0000 9147.2441 15.6414 -7.5000 -22.5000 -45.0000 9593.9736 15.7916 0.0000 -22.5000 -45.000010084.4141 15.7639 7.5000 -22.5000 -45.0000 9654.3467 15.7397 -7.5000 -15.0000 -45.000010068.5264 15.8009 0.0000 -15.0000 -45.000010607.1338 15.7634 7.5000 -15.0000 -45.000010135.0000 15.7276 -7.5000 -7.5000 -45.000010580.0176 15.7159 0.0000 -7.5000 -45.000011138.6631 15.6712 7.5000 -7.5000 -45.000010655.3164 15.6277 -7.5000 0.0000 -45.000011091.1416 15.6290 0.0000 0.0000 -45.000011696.6162 15.5867 7.5000 0.0000 -45.000011190.1748 15.5438 -7.5000 7.5000 -45.000010638.7451 15.6091 0.0000 7.5000 -45.000011196.5342 15.5775 7.5000 7.5000 -45.000010714.6006 15.5457 -7.5000 15.0000 -45.0000 9970.2812 15.6863 0.0000 15.0000 -45.000010464.5664 15.6621 7.5000 15.0000 -45.000010028.8115 15.6414 -7.5000 22.5000 -45.0000 9184.2109 15.7894 0.0000 22.5000 -45.0000 9653.5098 15.7617 7.5000 22.5000 -45.0000 9238.9199 15.7376 -7.5000 30.0000 -45.0000 8286.4883 15.5903 0.0000 30.0000 -45.0000 8693.6074 15.5533 7.5000 30.0000 -45.0000 8333.4805 15.5180 -7.5000 37.5000 -45.0000 7700.8120 15.5065 0.0000 37.5000 -45.0000 8083.1118 15.4624 7.5000 37.5000 -45.0000 7732.4331 15.4195 -7.5000 45.0000 -45.0000 6903.8789 15.0292 0.0000 45.0000 -45.0000 7224.5967 14.9885 7.5000 45.0000 -45.0000 6909.6533 14.9472 -7.5000 -45.0000 -37.5000 8621.2236 15.4613 0.0000 -45.0000 -37.5000 9024.8799 15.4228 7.5000 -45.0000 -37.5000 8685.7305 15.3923 -7.5000 -37.5000 -37.5000 9050.3682 15.4464 0.0000 -37.5000 -37.5000 9479.9316 15.4181 7.5000 -37.5000 -37.5000 9117.5439 15.3978 -7.5000 -30.0000 -37.5000 9688.5352 15.5344 0.0000 -30.0000 -37.500010172.5479 15.5138 7.5000 -30.0000 -37.5000 9759.3262 15.5067 -7.5000 -22.5000 -37.500010217.4883 15.6449 0.0000 -22.5000 -37.500010764.4326 15.6218 7.5000 -22.5000 -37.500010290.5596 15.6150 -7.5000 -15.0000 -37.500010720.0254 15.6503 0.0000 -15.0000 -37.500011278.8633 15.6184 7.5000 -15.0000 -37.500010767.4814 15.6013 -7.5000 -7.5000 -37.500011243.0596 15.5551 0.0000 -7.5000 -37.500011835.0254 15.5156 7.5000 -7.5000 -37.500011293.1367 15.4879 -7.5000 0.0000 -37.500011785.8398 15.4613 0.0000 0.0000 -37.500012409.5645 15.4228 7.5000 0.0000 -37.500011832.1396 15.3923 -7.5000 7.5000 -37.500011303.0020 15.4464 0.0000 7.5000 -37.500011893.5010 15.4181 7.5000 7.5000 -37.500011370.1074 15.3978 -7.5000 15.0000 -37.500010565.0098 15.5344 0.0000 15.0000 -37.500011086.4688 15.5138 7.5000 15.0000 -37.500010627.3184 15.5067 -7.5000 22.5000 -37.5000 9731.9717 15.6427 0.0000 22.5000 -37.500010175.8750 15.6196 7.5000 22.5000 -37.5000 9749.2891 15.6128 -7.5000 30.0000 -37.5000 8744.7412 15.4418 0.0000 30.0000 -37.5000 9133.4141 15.4103 7.5000 30.0000 -37.5000 8762.0684 15.3934 -7.5000 37.5000 -37.5000 8106.3989 15.3478 0.0000 37.5000 -37.5000 8491.1953 15.3088 7.5000 37.5000 -37.5000 8116.7295 15.2815 -7.5000 45.0000 -37.5000 7238.7461 14.8679 0.0000 45.0000 -37.5000 7558.2656 14.8309 7.5000 45.0000 -37.5000 7223.9219 14.8015 -7.5000 -45.0000 -30.0000 9377.7236 16.0567 0.0000 -45.0000 -30.0000 9825.9053 16.0287 7.5000 -45.0000 -30.0000 9460.7500 16.0069 -7.5000 -37.5000 -30.0000 9842.0996 16.0439 0.0000 -37.5000 -30.000010326.7969 16.0248 7.5000 -37.5000 -30.0000 9935.5479 16.0095 -7.5000 -30.0000 -30.000010514.3486 16.1412 0.0000 -30.0000 -30.000011025.2070 16.1282 7.5000 -30.0000 -30.000010603.9072 16.1273 -7.5000 -22.5000 -30.000011060.2207 16.2579 0.0000 -22.5000 -30.000011607.4805 16.2414 7.5000 -22.5000 -30.000011139.5176 16.2464 -7.5000 -15.0000 -30.000011570.5166 16.2628 0.0000 -15.0000 -30.000012132.2295 16.2384 7.5000 -15.0000 -30.000011613.2207 16.2371 -7.5000 -7.5000 -30.000012128.8633 16.1593 0.0000 -7.5000 -30.000012729.7783 16.1296 7.5000 -7.5000 -30.000012166.5137 16.1158 -7.5000 0.0000 -30.000012724.8711 16.0567 0.0000 0.0000 -30.000013367.8926 16.0287 7.5000 0.0000 -30.000012775.6328 16.0069 -7.5000 7.5000 -30.000012197.9688 16.0439 0.0000 7.5000 -30.000012768.7012 16.0248 7.5000 7.5000 -30.000012241.6924 16.0095 -7.5000 15.0000 -30.000011385.7119 16.1412 0.0000 15.0000 -30.000011861.4893 16.1282 7.5000 15.0000 -30.000011398.4727 16.1273 -7.5000 22.5000 -30.000010447.6211 16.2540 0.0000 22.5000 -30.000010860.7432 16.2375 7.5000 22.5000 -30.000010447.1523 16.2425 -7.5000 30.0000 -30.0000 9366.4385 16.0476 0.0000 30.0000 -30.0000 9740.6709 16.0235 7.5000 30.0000 -30.0000 9379.9336 16.0223 -7.5000 37.5000 -30.0000 8644.2373 15.9455 0.0000 37.5000 -30.0000 9031.7002 15.9162 7.5000 37.5000 -30.0000 8682.7061 15.9026 -7.5000 45.0000 -30.0000 7685.6982 15.4518 0.0000 45.0000 -30.0000 8018.0811 15.4249 7.5000 45.0000 -30.0000 7716.3550 15.4039 -7.5000 -45.0000 -22.500010162.8271 16.5930 0.0000 -45.0000 -22.500010665.0801 16.5762 7.5000 -45.0000 -22.500010280.8555 16.5496 -7.5000 -37.5000 -22.500010663.5498 16.5739 0.0000 -37.5000 -22.500011167.8516 16.5656 7.5000 -37.5000 -22.500010787.1670 16.5440 -7.5000 -30.0000 -22.500011372.0332 16.6687 0.0000 -30.0000 -22.500011910.1035 16.6639 7.5000 -30.0000 -22.500011491.4023 16.6555 -7.5000 -22.5000 -22.500011942.2227 16.7889 0.0000 -22.5000 -22.500012523.8857 16.7771 7.5000 -22.5000 -22.500012047.0762 16.7751 -7.5000 -15.0000 -22.500012482.9980 16.8008 0.0000 -15.0000 -22.500013063.3330 16.7801 7.5000 -15.0000 -22.500012559.0107 16.7730 -7.5000 -7.5000 -22.500013080.9873 16.7001 0.0000 -7.5000 -22.500013701.8359 16.6780 7.5000 -7.5000 -22.500013150.0176 16.6595 -7.5000 0.0000 -22.500013740.0762 16.5930 0.0000 0.0000 -22.500014395.2695 16.5762 7.5000 0.0000 -22.500013802.5410 16.5496 -7.5000 7.5000 -22.500013106.6006 16.5739 0.0000 7.5000 -22.500013733.0371 16.5656 7.5000 7.5000 -22.500013184.0371 16.5440 -7.5000 15.0000 -22.500012177.4893 16.6687 0.0000 15.0000 -22.500012711.3389 16.6639 7.5000 15.0000 -22.500012228.5381 16.6555 -7.5000 22.5000 -22.500011162.1660 16.7838 0.0000 22.5000 -22.500011590.2490 16.7719 7.5000 22.5000 -22.500011164.9883 16.7699 -7.5000 30.0000 -22.500010011.5342 16.5811 0.0000 30.0000 -22.500010383.0527 16.5606 7.5000 30.0000 -22.500010022.7920 16.5536 -7.5000 37.5000 -22.5000 9255.4932 16.4816 0.0000 37.5000 -22.5000 9606.9648 16.4599 7.5000 37.5000 -22.5000 9253.2510 16.4416 -7.5000 45.0000 -22.5000 8198.1943 15.9799 0.0000 45.0000 -22.5000 8516.2363 15.9637 7.5000 45.0000 -22.5000 8194.4941 15.9380 -7.5000 -45.0000 -15.000010969.7988 16.9643 0.0000 -45.0000 -15.000011517.2852 16.9473 7.5000 -45.0000 -15.000011097.5547 16.9082 -7.5000 -37.5000 -15.000011501.1719 16.9371 0.0000 -37.5000 -15.000012068.0410 16.9299 7.5000 -37.5000 -15.000011624.0664 16.8975 -7.5000 -30.0000 -15.000012267.4795 17.0227 0.0000 -30.0000 -15.000012902.0938 17.0190 7.5000 -30.0000 -15.000012403.2129 16.9978 -7.5000 -22.5000 -15.000012889.0127 17.1432 0.0000 -22.5000 -15.000013558.6738 17.1303 7.5000 -22.5000 -15.000013019.1484 17.1113 -7.5000 -15.0000 -15.000013464.4814 17.1629 0.0000 -15.0000 -15.000014132.3154 17.1392 7.5000 -15.0000 -15.000013575.9951 17.1126 -7.5000 -7.5000 -15.000014116.2920 17.0700 0.0000 -7.5000 -15.000014817.5078 17.0458 7.5000 -7.5000 -15.000014206.6074 17.0104 -7.5000 0.0000 -15.000014788.9902 16.9643 0.0000 0.0000 -15.000015519.4814 16.9473 7.5000 0.0000 -15.000014904.4678 16.9082 -7.5000 7.5000 -15.000014045.9014 16.9371 0.0000 7.5000 -15.000014726.0127 16.9299 7.5000 7.5000 -15.000014176.0742 16.8975 -7.5000 15.0000 -15.000013027.6807 17.0227 0.0000 15.0000 -15.000013577.7021 17.0190 7.5000 15.0000 -15.000013081.0312 16.9978 -7.5000 22.5000 -15.000011902.5195 17.1371 0.0000 22.5000 -15.000012340.9922 17.1243 7.5000 22.5000 -15.000011922.3984 17.1053 -7.5000 30.0000 -15.000010663.2695 16.9408 0.0000 30.0000 -15.000011050.4541 16.9174 7.5000 30.0000 -15.000010681.4443 16.8912 -7.5000 37.5000 -15.0000 9874.3525 16.8491 0.0000 37.5000 -15.000010217.3359 16.8252 7.5000 37.5000 -15.0000 9846.3447 16.7902 -7.5000 45.0000 -15.0000 8741.6758 16.3473 0.0000 45.0000 -15.0000 9044.2129 16.3309 7.5000 45.0000 -15.0000 8707.0840 16.2933 -7.5000 -45.0000 -7.500011851.9971 17.1261 0.0000 -45.0000 -7.500012465.1006 17.0956 7.5000 -45.0000 -7.500011972.1709 17.0485 -7.5000 -37.5000 -7.500012396.6377 17.0976 0.0000 -37.5000 -7.500013054.7920 17.0787 7.5000 -37.5000 -7.500012510.5752 17.0425 -7.5000 -30.0000 -7.500013262.1621 17.1783 0.0000 -30.0000 -7.500013975.5332 17.1658 7.5000 -30.0000 -7.500013404.5625 17.1399 -7.5000 -22.5000 -7.500013906.5244 17.2963 0.0000 -22.5000 -7.500014686.4668 17.2765 7.5000 -22.5000 -7.500014066.7686 17.2466 -7.5000 -15.0000 -7.500014500.0850 17.3151 0.0000 -15.0000 -7.500015284.7539 17.2832 7.5000 -15.0000 -7.500014628.5234 17.2412 -7.5000 -7.5000 -7.500015214.9990 17.2260 0.0000 -7.5000 -7.500016047.9111 17.1896 7.5000 -7.5000 -7.500015327.7705 17.1408 -7.5000 0.0000 -7.500015933.7461 17.1261 0.0000 0.0000 -7.500016800.2656 17.0956 7.5000 0.0000 -7.500016103.8291 17.0485 -7.5000 7.5000 -7.500015110.3691 17.0976 0.0000 7.5000 -7.500015890.4258 17.0787 7.5000 7.5000 -7.500015263.8545 17.0425 -7.5000 15.0000 -7.500013979.3037 17.1783 0.0000 15.0000 -7.500014586.5371 17.1658 7.5000 15.0000 -7.500014027.9082 17.1399 -7.5000 22.5000 -7.500012733.1113 17.2884 0.0000 22.5000 -7.500013236.6514 17.2685 7.5000 22.5000 -7.500012759.4541 17.2386 -7.5000 30.0000 -7.500011423.0615 17.0906 0.0000 30.0000 -7.500011891.3984 17.0590 7.5000 30.0000 -7.500011469.0615 17.0176 -7.5000 37.5000 -7.500010556.9199 17.0026 0.0000 37.5000 -7.500010975.1543 16.9667 7.5000 37.5000 -7.500010562.3584 16.9185 -7.5000 45.0000 -7.5000 9319.1406 16.5064 0.0000 45.0000 -7.5000 9676.3818 16.4769 7.5000 45.0000 -7.5000 9302.0244 16.4315 -7.5000 -45.0000 0.000012666.6328 17.1462 0.0000 -45.0000 0.000013312.2217 17.1029 7.5000 -45.0000 0.000012804.6240 17.0592 -7.5000 -37.5000 0.000013254.3574 17.1243 0.0000 -37.5000 0.000013976.6152 17.0938 7.5000 -37.5000 0.000013391.3008 17.0634 -7.5000 -30.0000 0.000014223.4277 17.2105 0.0000 -30.0000 0.000015034.1953 17.1890 7.5000 -30.0000 0.000014400.4629 17.1705 -7.5000 -22.5000 0.000014995.2256 17.3272 0.0000 -22.5000 0.000015966.9551 17.3017 7.5000 -22.5000 0.000015247.5527 17.2779 -7.5000 -15.0000 0.000015631.0381 17.3372 0.0000 -15.0000 0.000016672.3984 17.2999 7.5000 -15.0000 0.000015872.2900 17.2620 -7.5000 -7.5000 0.000016383.1943 17.2427 0.0000 -7.5000 0.000017458.6074 17.1967 7.5000 -7.5000 0.000016592.2324 17.1508 -7.5000 0.0000 0.000017104.0039 17.1462 0.0000 0.0000 0.000018236.0078 17.1029 7.5000 0.0000 0.000017371.3691 17.0592 -7.5000 7.5000 0.000016222.3232 17.1243 0.0000 7.5000 0.000017210.8086 17.0938 7.5000 7.5000 0.000016449.1367 17.0634 -7.5000 15.0000 0.000014944.9658 17.2105 0.0000 15.0000 0.000015754.6689 17.1890 7.5000 15.0000 0.000015060.8916 17.1705 -7.5000 22.5000 0.000013600.7549 17.3192 0.0000 22.5000 0.000014283.3008 17.2937 7.5000 22.5000 0.000013673.4531 17.2700 -7.5000 30.0000 0.000012203.5879 17.1128 0.0000 30.0000 0.000012812.7637 17.0760 7.5000 30.0000 0.000012257.0615 17.0386 -7.5000 37.5000 0.000011263.7031 17.0196 0.0000 37.5000 0.000011807.0332 16.9741 7.5000 37.5000 0.000011300.9199 16.9289 -7.5000 45.0000 0.0000 9870.9316 16.5270 0.0000 45.0000 0.000010315.6738 16.4852 7.5000 45.0000 0.0000 9908.2227 16.4431 -7.5000 -45.0000 7.500012431.3242 17.1509 0.0000 -45.0000 7.500013165.4219 17.1095 7.5000 -45.0000 7.500012604.9053 17.0799 -7.5000 -37.5000 7.500013009.8887 17.1358 0.0000 -37.5000 7.500013769.5840 17.1060 7.5000 -37.5000 7.500013190.3643 17.0873 -7.5000 -30.0000 7.500014077.3994 17.2327 0.0000 -30.0000 7.500014968.4453 17.2123 7.5000 -30.0000 7.500014300.0947 17.2075 -7.5000 -22.5000 7.500015011.7158 17.3526 0.0000 -22.5000 7.500016230.5762 17.3300 7.5000 -22.5000 7.500015380.8457 17.3253 -7.5000 -15.0000 7.500015660.2139 17.3568 0.0000 -15.0000 7.500017098.4980 17.3241 7.5000 -15.0000 7.500016083.2803 17.3084 -7.5000 -7.5000 7.500016305.4629 17.2523 0.0000 -7.5000 7.500017807.0449 17.2103 7.5000 -7.5000 7.500016697.5781 17.1836 -7.5000 0.0000 7.500017038.8457 17.1509 0.0000 0.0000 7.500018460.5078 17.1095 7.5000 0.0000 7.500017359.9863 17.0799 -7.5000 7.5000 7.500016171.4502 17.1358 0.0000 7.5000 7.500017387.9453 17.1060 7.5000 7.5000 7.500016384.4121 17.0873 -7.5000 15.0000 7.500014826.3828 17.2327 0.0000 15.0000 7.500015826.9316 17.2123 7.5000 15.0000 7.500014967.6602 17.2075 -7.5000 22.5000 7.500013453.4111 17.3447 0.0000 22.5000 7.500014249.5645 17.3221 7.5000 22.5000 7.500013495.4004 17.3173 -7.5000 30.0000 7.500012025.3311 17.1321 0.0000 30.0000 7.500012692.3506 17.0999 7.5000 30.0000 7.500012058.2383 17.0844 -7.5000 37.5000 7.500011059.1816 17.0290 0.0000 37.5000 7.500011655.2148 16.9876 7.5000 37.5000 7.500011073.9453 16.9612 -7.5000 45.0000 7.5000 9652.1006 16.5315 0.0000 45.0000 7.500010167.9316 16.4915 7.5000 45.0000 7.5000 9707.3213 16.4630 -7.5000 -45.0000 15.000012107.5557 17.1702 0.0000 -45.0000 15.000012889.3066 17.1418 7.5000 -45.0000 15.000012284.5127 17.1207 -7.5000 -37.5000 15.000012653.4980 17.1570 0.0000 -37.5000 15.000013477.4736 17.1379 7.5000 -37.5000 15.000012825.8848 17.1234 -7.5000 -30.0000 15.000013661.0361 17.2604 0.0000 -30.0000 15.000014673.8955 17.2481 7.5000 -30.0000 15.000013887.8984 17.2484 -7.5000 -22.5000 15.000014570.2988 17.3838 0.0000 -22.5000 15.000016035.4883 17.3682 7.5000 -22.5000 15.000014940.9385 17.3747 -7.5000 -15.0000 15.000015258.4883 17.3881 0.0000 -15.0000 15.000017021.0684 17.3642 7.5000 -15.0000 15.000015730.1934 17.3644 -7.5000 -7.5000 15.000015984.4404 17.2783 0.0000 -7.5000 15.000017789.0254 17.2486 7.5000 -7.5000 15.000016426.0254 17.2359 -7.5000 0.0000 15.000016700.9902 17.1702 0.0000 0.0000 15.000018392.6562 17.1418 7.5000 0.0000 15.000017059.0410 17.1207 -7.5000 7.5000 15.000015823.4316 17.1570 0.0000 7.5000 15.000017230.8633 17.1379 7.5000 7.5000 15.000016055.2266 17.1234 -7.5000 15.0000 15.000014474.2002 17.2604 0.0000 15.0000 15.000015546.8076 17.2481 7.5000 15.0000 15.000014605.9941 17.2484 -7.5000 22.5000 15.000013048.9014 17.3758 0.0000 22.5000 15.000013864.1250 17.3602 7.5000 22.5000 15.000013102.2520 17.3667 -7.5000 30.0000 15.000011658.7256 17.1631 0.0000 30.0000 15.000012293.0430 17.1395 7.5000 30.0000 15.000011656.9971 17.1396 -7.5000 37.5000 15.000010694.6924 17.0547 0.0000 37.5000 15.000011241.1475 17.0254 7.5000 37.5000 15.000010703.5850 17.0128 -7.5000 45.0000 15.0000 9311.1162 16.5500 0.0000 45.0000 15.0000 9782.3115 16.5228 7.5000 45.0000 15.0000 9350.6406 16.5024 -7.5000 -45.0000 22.500011614.8506 17.1861 0.0000 -45.0000 22.500012407.9053 17.1694 7.5000 -45.0000 22.500011786.0146 17.1421 -7.5000 -37.5000 22.500012147.2197 17.1670 0.0000 -37.5000 22.500012930.8291 17.1588 7.5000 -37.5000 22.500012294.1416 17.1366 -7.5000 -30.0000 22.500013057.7207 17.2651 0.0000 -30.0000 22.500013981.5439 17.2605 7.5000 -30.0000 22.500013221.7002 17.2518 -7.5000 -22.5000 22.500013830.8379 17.3888 0.0000 -22.5000 22.500015029.9775 17.3771 7.5000 -22.5000 22.500014085.5479 17.3750 -7.5000 -15.0000 22.500014563.2607 17.4003 0.0000 -15.0000 22.500015877.3867 17.3797 7.5000 -15.0000 22.500014861.8516 17.3726 -7.5000 -7.5000 22.500015381.2959 17.2961 0.0000 -7.5000 22.500016732.6719 17.2742 7.5000 -7.5000 22.500015683.2852 17.2554 -7.5000 0.0000 22.500016169.7979 17.1861 0.0000 0.0000 22.500017490.0566 17.1694 7.5000 0.0000 22.500016432.5293 17.1421 -7.5000 7.5000 22.500015248.8018 17.1670 0.0000 7.5000 22.500016435.0312 17.1588 7.5000 7.5000 22.500015437.0557 17.1366 -7.5000 15.0000 22.500013907.9521 17.2651 0.0000 15.0000 22.500014881.2480 17.2605 7.5000 15.0000 22.500014037.0127 17.2518 -7.5000 22.5000 22.500012472.3604 17.3808 0.0000 22.5000 22.500013252.4238 17.3691 7.5000 22.5000 22.500012547.5400 17.3670 -7.5000 30.0000 22.500011083.3545 17.1751 0.0000 30.0000 22.500011698.2344 17.1548 7.5000 30.0000 22.500011092.1045 17.1477 -7.5000 37.5000 22.500010140.9492 17.0723 0.0000 37.5000 22.500010682.1719 17.0507 7.5000 37.5000 22.500010164.7148 17.0320 -7.5000 45.0000 22.5000 8808.0088 16.5654 0.0000 45.0000 22.5000 9269.7412 16.5493 7.5000 45.0000 22.5000 8837.6650 16.5230 -7.5000 -45.0000 30.000010943.1641 17.1853 0.0000 -45.0000 30.000011584.3750 17.1682 7.5000 -45.0000 30.000011063.4961 17.1291 -7.5000 -37.5000 30.000011446.4961 17.1575 0.0000 -37.5000 30.000012053.4238 17.1504 7.5000 -37.5000 30.000011534.4453 17.1180 -7.5000 -30.0000 30.000012266.7676 17.2438 0.0000 -30.0000 30.000012990.2256 17.2401 7.5000 -30.0000 30.000012375.8594 17.2188 -7.5000 -22.5000 30.000012972.9219 17.3657 0.0000 -22.5000 30.000013826.7393 17.3525 7.5000 -22.5000 30.000013098.3457 17.3331 -7.5000 -15.0000 30.000013664.1221 17.3859 0.0000 -15.0000 30.000014564.2920 17.3618 7.5000 -15.0000 30.000013802.9053 17.3345 -7.5000 -7.5000 30.000014431.1133 17.2922 0.0000 -7.5000 30.000015362.7881 17.2677 7.5000 -7.5000 30.000014581.1055 17.2318 -7.5000 0.0000 30.000015115.2168 17.1853 0.0000 0.0000 30.000016079.4482 17.1682 7.5000 0.0000 30.000015266.9834 17.1291 -7.5000 7.5000 30.000014263.4658 17.1575 0.0000 7.5000 30.000015136.4951 17.1504 7.5000 7.5000 30.000014369.0361 17.1180 -7.5000 15.0000 30.000013035.6895 17.2438 0.0000 15.0000 30.000013796.0635 17.2401 7.5000 15.0000 30.000013116.7236 17.2188 -7.5000 22.5000 30.000011692.3047 17.3577 0.0000 22.5000 30.000012373.6582 17.3445 7.5000 22.5000 30.000011747.6738 17.3251 -7.5000 30.0000 30.000010358.3477 17.1609 0.0000 30.0000 30.000010934.6309 17.1371 7.5000 30.0000 30.000010383.8643 17.1102 -7.5000 37.5000 30.0000 9447.9199 17.0684 0.0000 37.5000 30.0000 9965.5381 17.0442 7.5000 37.5000 30.0000 9468.7783 17.0088 -7.5000 45.0000 30.0000 8185.6899 16.5646 0.0000 45.0000 30.0000 8639.5547 16.5482 7.5000 45.0000 30.0000 8217.9609 16.5105 -7.5000 -45.0000 37.500010629.4590 17.3406 0.0000 -45.0000 37.500011134.2129 17.3096 7.5000 -45.0000 37.500010713.4443 17.2615 -7.5000 -37.5000 37.500011132.5244 17.3125 0.0000 -37.5000 37.500011652.1357 17.2934 7.5000 -37.5000 37.500011191.3545 17.2564 -7.5000 -30.0000 37.500011902.4170 17.3923 0.0000 -30.0000 37.500012525.1299 17.3796 7.5000 -30.0000 37.500011986.0635 17.3531 -7.5000 -22.5000 37.500012564.2969 17.5095 0.0000 -22.5000 37.500013252.1074 17.4892 7.5000 -22.5000 37.500012645.3564 17.4586 -7.5000 -15.0000 37.500013211.7480 17.5281 0.0000 -15.0000 37.500013928.8057 17.4956 7.5000 -15.0000 37.500013285.1797 17.4525 -7.5000 -7.5000 37.500013914.5332 17.4395 0.0000 -7.5000 37.500014684.2041 17.4026 7.5000 -7.5000 37.500014005.9922 17.3525 -7.5000 0.0000 37.500014520.6934 17.3406 0.0000 0.0000 37.500015329.1143 17.3096 7.5000 0.0000 37.500014617.6045 17.2615 -7.5000 7.5000 37.500013687.5527 17.3125 0.0000 7.5000 37.500014420.9277 17.2934 7.5000 7.5000 37.500013759.7939 17.2564 -7.5000 15.0000 37.500012557.8721 17.3923 0.0000 15.0000 37.500013231.4805 17.3796 7.5000 15.0000 37.500012626.4922 17.3531 -7.5000 22.5000 37.500011311.8525 17.5014 0.0000 22.5000 37.500011906.0273 17.4812 7.5000 22.5000 37.500011361.3955 17.4505 -7.5000 30.0000 37.5000 9982.4219 17.3013 0.0000 30.0000 37.500010501.1504 17.2692 7.5000 30.0000 37.500010023.5771 17.2267 -7.5000 37.5000 37.5000 9075.8115 17.2138 0.0000 37.5000 37.5000 9544.0449 17.1774 7.5000 37.5000 37.5000 9092.9746 17.1279 -7.5000 45.0000 37.5000 7864.9873 16.7143 0.0000 45.0000 37.5000 8263.0488 16.6845 7.5000 45.0000 37.5000 7882.2935 16.6381 -7.5000 -45.0000 45.0000 9819.5400 17.5233 0.0000 -45.0000 45.000010200.7529 17.4782 7.5000 -45.0000 45.0000 9863.7031 17.4320 -7.5000 -37.5000 45.000010279.9551 17.5016 0.0000 -37.5000 45.000010718.5068 17.4706 7.5000 -37.5000 45.000010340.4717 17.4388 -7.5000 -30.0000 45.000010994.5127 17.5863 0.0000 -30.0000 45.000011508.0791 17.5645 7.5000 -30.0000 45.000011062.8545 17.5454 -7.5000 -22.5000 45.000011601.9033 17.7021 0.0000 -22.5000 45.000012167.6982 17.6751 7.5000 -22.5000 45.000011659.5820 17.6504 -7.5000 -15.0000 45.000012153.2637 17.7126 0.0000 -15.0000 45.000012722.0898 17.6728 7.5000 -15.0000 45.000012192.2373 17.6327 -7.5000 -7.5000 45.000012761.6445 17.6189 0.0000 -7.5000 45.000013355.3359 17.5701 7.5000 -7.5000 45.000012806.9648 17.5215 -7.5000 0.0000 45.000013302.0996 17.5233 0.0000 0.0000 45.000013959.5811 17.4782 7.5000 0.0000 45.000013386.2910 17.4320 -7.5000 7.5000 45.000012524.5625 17.5016 0.0000 7.5000 45.000013137.5098 17.4706 7.5000 7.5000 45.000012587.1348 17.4388 -7.5000 15.0000 45.000011532.2959 17.5863 0.0000 15.0000 45.000012114.2373 17.5645 7.5000 15.0000 45.000011581.0879 17.5454 -7.5000 22.5000 45.000010398.7236 17.6939 0.0000 22.5000 45.000010906.0713 17.6669 7.5000 22.5000 45.000010439.6035 17.6422 -7.5000 30.0000 45.0000 9189.3184 17.4819 0.0000 30.0000 45.0000 9639.1328 17.4425 7.5000 30.0000 45.0000 9199.8760 17.4030 -7.5000 37.5000 45.0000 8340.7266 17.3894 0.0000 37.5000 45.0000 8761.5723 17.3412 7.5000 37.5000 45.0000 8346.7734 17.2933 -7.5000 45.0000 45.0000 7228.2988 16.8981 0.0000 45.0000 45.0000 7595.0562 16.8546 7.5000 45.0000 45.0000 7247.2266 16.8101 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 rotation matrix determinant 1.000000 image alignment mode 4355 decimal 1103 hex -7.5000 -45.0000 -37.5000 2246.3962 16.8335 0.0000 -45.0000 -37.5000 2265.2297 16.6622 7.5000 -45.0000 -37.5000 2262.4890 16.7455 -7.5000 -37.5000 -37.5000 2311.1216 15.9326 0.0000 -37.5000 -37.5000 2328.4009 15.7836 7.5000 -37.5000 -37.5000 2323.4138 15.8978 -7.5000 -30.0000 -37.5000 2334.0552 15.4021 0.0000 -30.0000 -37.5000 2356.5476 15.2511 7.5000 -30.0000 -37.5000 2348.6968 15.3343 -7.5000 -22.5000 -37.5000 2337.6274 15.1447 0.0000 -22.5000 -37.5000 2363.0498 14.9964 7.5000 -22.5000 -37.5000 2348.8828 15.0823 -7.5000 -15.0000 -37.5000 2330.0171 15.1552 0.0000 -15.0000 -37.5000 2348.3264 14.9956 7.5000 -15.0000 -37.5000 2336.3884 15.1043 -7.5000 -7.5000 -37.5000 2309.5566 15.4750 0.0000 -7.5000 -37.5000 2329.8589 15.2636 7.5000 -7.5000 -37.5000 2320.9487 15.3493 -7.5000 0.0000 -37.5000 2274.1360 16.2056 0.0000 0.0000 -37.5000 2296.2046 15.9724 7.5000 0.0000 -37.5000 2279.5303 16.0749 -7.5000 7.5000 -37.5000 2223.9272 17.2346 0.0000 7.5000 -37.5000 2247.9436 17.0010 7.5000 7.5000 -37.5000 2236.7791 17.1654 -7.5000 15.0000 -37.5000 2152.0696 18.5883 0.0000 15.0000 -37.5000 2176.5083 18.3878 7.5000 15.0000 -37.5000 2170.0251 18.5596 -7.5000 22.5000 -37.5000 2070.3262 20.3839 0.0000 22.5000 -37.5000 2091.8040 20.1571 7.5000 22.5000 -37.5000 2080.0681 20.3415 -7.5000 30.0000 -37.5000 1961.8567 22.7712 0.0000 30.0000 -37.5000 1986.2345 22.5319 7.5000 30.0000 -37.5000 1967.3379 22.7734 -7.5000 37.5000 -37.5000 1842.1135 25.9686 0.0000 37.5000 -37.5000 1872.6875 25.7722 7.5000 37.5000 -37.5000 1854.5417 25.9237 -7.5000 45.0000 -37.5000 1716.3201 30.2049 0.0000 45.0000 -37.5000 1733.9983 29.9916 7.5000 45.0000 -37.5000 1727.1582 30.1309 -7.5000 -45.0000 -30.0000 2380.1348 16.2478 0.0000 -45.0000 -30.0000 2404.3806 16.0737 7.5000 -45.0000 -30.0000 2398.0706 16.1577 -7.5000 -37.5000 -30.0000 2449.0754 15.3338 0.0000 -37.5000 -30.0000 2474.0208 15.1833 7.5000 -37.5000 -30.0000 2466.6230 15.2893 -7.5000 -30.0000 -30.0000 2477.6411 14.8234 0.0000 -30.0000 -30.0000 2500.2397 14.6807 7.5000 -30.0000 -30.0000 2493.5315 14.7748 -7.5000 -22.5000 -30.0000 2479.5583 14.5886 0.0000 -22.5000 -30.0000 2503.8826 14.4117 7.5000 -22.5000 -30.0000 2494.7632 14.5277 -7.5000 -15.0000 -30.0000 2471.6453 14.5380 0.0000 -15.0000 -30.0000 2494.8179 14.3713 7.5000 -15.0000 -30.0000 2483.3733 14.4806 -7.5000 -7.5000 -30.0000 2451.5977 14.8381 0.0000 -7.5000 -30.0000 2475.7817 14.6070 7.5000 -7.5000 -30.0000 2465.0095 14.6879 -7.5000 0.0000 -30.0000 2409.0391 15.4779 0.0000 0.0000 -30.0000 2438.4268 15.2527 7.5000 0.0000 -30.0000 2422.4080 15.3558 -7.5000 7.5000 -30.0000 2356.7241 16.4451 0.0000 7.5000 -30.0000 2386.4214 16.1984 7.5000 7.5000 -30.0000 2373.4570 16.3641 -7.5000 15.0000 -30.0000 2283.1367 17.7301 0.0000 15.0000 -30.0000 2304.8416 17.5177 7.5000 15.0000 -30.0000 2299.5024 17.6893 -7.5000 22.5000 -30.0000 2188.6218 19.4002 0.0000 22.5000 -30.0000 2213.6238 19.2047 7.5000 22.5000 -30.0000 2203.2646 19.3851 -7.5000 30.0000 -30.0000 2072.7686 21.6236 0.0000 30.0000 -30.0000 2102.0662 21.3839 7.5000 30.0000 -30.0000 2087.1887 21.5909 -7.5000 37.5000 -30.0000 1945.6832 24.6113 0.0000 37.5000 -30.0000 1980.5065 24.4339 7.5000 37.5000 -30.0000 1965.1509 24.6221 -7.5000 45.0000 -30.0000 1812.5824 28.6134 0.0000 45.0000 -30.0000 1841.4946 28.4190 7.5000 45.0000 -30.0000 1829.5575 28.6751 -7.5000 -45.0000 -22.5000 2478.7593 15.5381 0.0000 -45.0000 -22.5000 2503.5613 15.3542 7.5000 -45.0000 -22.5000 2500.3396 15.4529 -7.5000 -37.5000 -22.5000 2554.2031 14.6863 0.0000 -37.5000 -22.5000 2572.2634 14.5110 7.5000 -37.5000 -22.5000 2572.9189 14.5918 -7.5000 -30.0000 -22.5000 2586.5999 14.1377 0.0000 -30.0000 -22.5000 2606.2158 13.9690 7.5000 -30.0000 -22.5000 2606.5757 14.0413 -7.5000 -22.5000 -22.5000 2596.6963 13.8589 0.0000 -22.5000 -22.5000 2622.5828 13.6652 7.5000 -22.5000 -22.5000 2615.5168 13.7708 -7.5000 -15.0000 -22.5000 2597.6763 13.7944 0.0000 -15.0000 -22.5000 2620.6426 13.6329 7.5000 -15.0000 -22.5000 2609.8455 13.7373 -7.5000 -7.5000 -22.5000 2580.2817 14.0331 0.0000 -7.5000 -22.5000 2606.7664 13.8581 7.5000 -7.5000 -22.5000 2593.7336 13.9510 -7.5000 0.0000 -22.5000 2535.9954 14.6813 0.0000 0.0000 -22.5000 2566.7432 14.4655 7.5000 0.0000 -22.5000 2551.6138 14.5838 -7.5000 7.5000 -22.5000 2471.2996 15.5831 0.0000 7.5000 -22.5000 2511.4539 15.3555 7.5000 7.5000 -22.5000 2491.1707 15.5050 -7.5000 15.0000 -22.5000 2389.6047 16.7641 0.0000 15.0000 -22.5000 2424.1194 16.5628 7.5000 15.0000 -22.5000 2408.6296 16.6916 -7.5000 22.5000 -22.5000 2292.0149 18.2978 0.0000 22.5000 -22.5000 2317.1111 18.0725 7.5000 22.5000 -22.5000 2302.4197 18.2398 -7.5000 30.0000 -22.5000 2172.4871 20.3950 0.0000 30.0000 -22.5000 2197.4668 20.1540 7.5000 30.0000 -22.5000 2181.2056 20.3297 -7.5000 37.5000 -22.5000 2031.6873 23.1703 0.0000 37.5000 -22.5000 2060.3979 22.9601 7.5000 37.5000 -22.5000 2046.2249 23.1045 -7.5000 45.0000 -22.5000 1887.8551 26.8629 0.0000 45.0000 -22.5000 1916.4843 26.6422 7.5000 45.0000 -22.5000 1899.2592 26.8265 -7.5000 -45.0000 -15.0000 2536.5918 14.8055 0.0000 -45.0000 -15.0000 2561.8223 14.6308 7.5000 -45.0000 -15.0000 2561.0100 14.6547 -7.5000 -37.5000 -15.0000 2615.3616 13.9424 0.0000 -37.5000 -15.0000 2638.5320 13.7863 7.5000 -37.5000 -15.0000 2639.3374 13.8530 -7.5000 -30.0000 -15.0000 2661.8899 13.4131 0.0000 -30.0000 -15.0000 2686.5249 13.2858 7.5000 -30.0000 -15.0000 2681.1367 13.3224 -7.5000 -22.5000 -15.0000 2685.2422 13.0958 0.0000 -22.5000 -15.0000 2710.4675 12.9293 7.5000 -22.5000 -15.0000 2702.5520 12.9964 -7.5000 -15.0000 -15.0000 2691.0754 12.9961 0.0000 -15.0000 -15.0000 2716.9854 12.8371 7.5000 -15.0000 -15.0000 2705.4524 12.9158 -7.5000 -7.5000 -15.0000 2679.0105 13.2672 0.0000 -7.5000 -15.0000 2707.8171 13.0959 7.5000 -7.5000 -15.0000 2690.7188 13.1643 -7.5000 0.0000 -15.0000 2630.8860 13.9196 0.0000 0.0000 -15.0000 2665.9944 13.7120 7.5000 0.0000 -15.0000 2649.0217 13.7930 -7.5000 7.5000 -15.0000 2564.6973 14.7523 0.0000 7.5000 -15.0000 2606.1086 14.5544 7.5000 7.5000 -15.0000 2586.3022 14.6666 -7.5000 15.0000 -15.0000 2477.9187 15.8080 0.0000 15.0000 -15.0000 2510.8691 15.6281 7.5000 15.0000 -15.0000 2493.7598 15.7192 -7.5000 22.5000 -15.0000 2379.0400 17.2075 0.0000 22.5000 -15.0000 2398.2964 16.9903 7.5000 22.5000 -15.0000 2386.6047 17.1289 -7.5000 30.0000 -15.0000 2246.1387 19.2548 0.0000 30.0000 -15.0000 2270.5203 18.9870 7.5000 30.0000 -15.0000 2253.0999 19.1298 -7.5000 37.5000 -15.0000 2102.9941 21.9013 0.0000 37.5000 -15.0000 2126.5449 21.6283 7.5000 37.5000 -15.0000 2104.5776 21.8022 -7.5000 45.0000 -15.0000 1953.8979 25.4054 0.0000 45.0000 -15.0000 1974.1143 25.0545 7.5000 45.0000 -15.0000 1946.2014 25.2239 -7.5000 -45.0000 -7.5000 2565.8960 14.0587 0.0000 -45.0000 -7.5000 2596.7056 13.8879 7.5000 -45.0000 -7.5000 2594.4485 13.9315 -7.5000 -37.5000 -7.5000 2657.7927 13.2505 0.0000 -37.5000 -7.5000 2684.6462 13.1038 7.5000 -37.5000 -7.5000 2680.3020 13.1410 -7.5000 -30.0000 -7.5000 2721.7400 12.7096 0.0000 -30.0000 -7.5000 2741.9309 12.6079 7.5000 -30.0000 -7.5000 2737.9915 12.6287 -7.5000 -22.5000 -7.5000 2751.7512 12.4002 0.0000 -22.5000 -7.5000 2778.6243 12.2741 7.5000 -22.5000 -7.5000 2770.6343 12.3010 -7.5000 -15.0000 -7.5000 2761.7837 12.2745 0.0000 -15.0000 -7.5000 2792.4897 12.0896 7.5000 -15.0000 -7.5000 2773.1238 12.1713 -7.5000 -7.5000 -7.5000 2756.9094 12.5317 0.0000 -7.5000 -7.5000 2789.5603 12.3390 7.5000 -7.5000 -7.5000 2764.5593 12.4169 -7.5000 0.0000 -7.5000 2710.3132 13.1876 0.0000 0.0000 -7.5000 2751.7368 12.9644 7.5000 0.0000 -7.5000 2726.7419 13.0605 -7.5000 7.5000 -7.5000 2636.2512 13.9980 0.0000 7.5000 -7.5000 2680.1904 13.8021 7.5000 7.5000 -7.5000 2656.6484 13.8918 -7.5000 15.0000 -7.5000 2545.5916 14.9486 0.0000 15.0000 -7.5000 2573.6211 14.7642 7.5000 15.0000 -7.5000 2554.3872 14.8953 -7.5000 22.5000 -7.5000 2437.9700 16.3110 0.0000 22.5000 -7.5000 2465.0569 16.0829 7.5000 22.5000 -7.5000 2444.4841 16.2274 -7.5000 30.0000 -7.5000 2305.9614 18.2294 0.0000 30.0000 -7.5000 2340.7996 17.9541 7.5000 30.0000 -7.5000 2318.4302 18.0907 -7.5000 37.5000 -7.5000 2155.3303 20.7326 0.0000 37.5000 -7.5000 2184.5110 20.3981 7.5000 37.5000 -7.5000 2158.8572 20.6210 -7.5000 45.0000 -7.5000 1993.9648 24.0058 0.0000 45.0000 -7.5000 2018.7504 23.5521 7.5000 45.0000 -7.5000 1994.8624 23.7678 -7.5000 -45.0000 0.0000 2584.3560 13.4964 0.0000 -45.0000 0.0000 2605.7881 13.3021 7.5000 -45.0000 0.0000 2611.8647 13.3467 -7.5000 -37.5000 0.0000 2682.7043 12.7445 0.0000 -37.5000 0.0000 2705.9277 12.5643 7.5000 -37.5000 0.0000 2708.1357 12.6192 -7.5000 -30.0000 0.0000 2750.5344 12.2697 0.0000 -30.0000 0.0000 2775.1445 12.1335 7.5000 -30.0000 0.0000 2771.8147 12.1859 -7.5000 -22.5000 0.0000 2793.5701 11.9900 0.0000 -22.5000 0.0000 2828.7273 11.8940 7.5000 -22.5000 0.0000 2817.7781 11.9204 -7.5000 -15.0000 0.0000 2821.4204 11.8166 0.0000 -15.0000 0.0000 2869.9937 11.6775 7.5000 -15.0000 0.0000 2842.6689 11.7421 -7.5000 -7.5000 0.0000 2821.3770 12.0684 0.0000 -7.5000 0.0000 2868.4792 11.8823 7.5000 -7.5000 0.0000 2832.3157 11.9870 -7.5000 0.0000 0.0000 2765.4907 12.6412 0.0000 0.0000 0.0000 2817.8870 12.4648 7.5000 0.0000 0.0000 2780.4507 12.5908 -7.5000 7.5000 0.0000 2689.9202 13.4048 0.0000 7.5000 0.0000 2734.5332 13.2255 7.5000 7.5000 0.0000 2706.0176 13.3456 -7.5000 15.0000 0.0000 2588.7893 14.3655 0.0000 15.0000 0.0000 2619.2639 14.1753 7.5000 15.0000 0.0000 2600.8171 14.3099 -7.5000 22.5000 0.0000 2472.3628 15.7545 0.0000 22.5000 0.0000 2499.8574 15.5045 7.5000 22.5000 0.0000 2480.8726 15.6411 -7.5000 30.0000 0.0000 2339.3662 17.6018 0.0000 30.0000 0.0000 2374.3865 17.2712 7.5000 30.0000 0.0000 2350.9336 17.4399 -7.5000 37.5000 0.0000 2189.4941 19.9339 0.0000 37.5000 0.0000 2226.1577 19.5722 7.5000 37.5000 0.0000 2203.5476 19.7837 -7.5000 45.0000 0.0000 2023.2086 23.0006 0.0000 45.0000 0.0000 2053.0859 22.5666 7.5000 45.0000 0.0000 2036.2112 22.8451 -7.5000 -45.0000 7.5000 2595.8374 13.1049 0.0000 -45.0000 7.5000 2616.7827 12.9381 7.5000 -45.0000 7.5000 2621.7256 12.9489 -7.5000 -37.5000 7.5000 2696.1677 12.3982 0.0000 -37.5000 7.5000 2714.9060 12.2782 7.5000 -37.5000 7.5000 2719.6980 12.3084 -7.5000 -30.0000 7.5000 2768.2449 12.0222 0.0000 -30.0000 7.5000 2794.4980 11.9251 7.5000 -30.0000 7.5000 2792.8054 11.9803 -7.5000 -22.5000 7.5000 2824.8044 11.8351 0.0000 -22.5000 7.5000 2861.8662 11.8242 7.5000 -22.5000 7.5000 2857.5273 11.8239 -7.5000 -15.0000 7.5000 2865.5122 11.6753 0.0000 -15.0000 7.5000 2933.6470 11.6938 7.5000 -15.0000 7.5000 2904.0969 11.6785 -7.5000 -7.5000 7.5000 2863.4714 11.7938 0.0000 -7.5000 7.5000 2945.6604 11.7828 7.5000 -7.5000 7.5000 2893.9758 11.7941 -7.5000 0.0000 7.5000 2801.7671 12.3434 0.0000 0.0000 7.5000 2866.9478 12.2560 7.5000 0.0000 7.5000 2817.6970 12.2949 -7.5000 7.5000 7.5000 2719.8933 13.0608 0.0000 7.5000 7.5000 2765.9514 12.9489 7.5000 7.5000 7.5000 2727.6470 13.0016 -7.5000 15.0000 7.5000 2601.8518 14.0662 0.0000 15.0000 7.5000 2635.5376 13.9034 7.5000 15.0000 7.5000 2617.6558 13.9545 -7.5000 22.5000 7.5000 2485.7009 15.4063 0.0000 22.5000 7.5000 2512.3088 15.2133 7.5000 22.5000 7.5000 2491.9170 15.2895 -7.5000 30.0000 7.5000 2353.6045 17.2379 0.0000 30.0000 7.5000 2383.7302 17.0076 7.5000 30.0000 7.5000 2361.5244 17.1294 -7.5000 37.5000 7.5000 2206.4585 19.5916 0.0000 37.5000 7.5000 2234.2625 19.3330 7.5000 37.5000 7.5000 2218.6509 19.4495 -7.5000 45.0000 7.5000 2041.0358 22.5704 0.0000 45.0000 7.5000 2067.5684 22.2501 7.5000 45.0000 7.5000 2057.5369 22.4569 -7.5000 -45.0000 15.0000 2604.9473 12.9528 0.0000 -45.0000 15.0000 2622.6743 12.8291 7.5000 -45.0000 15.0000 2622.6001 12.8779 -7.5000 -37.5000 15.0000 2704.2495 12.2704 0.0000 -37.5000 15.0000 2721.1990 12.2174 7.5000 -37.5000 15.0000 2719.9873 12.2564 -7.5000 -30.0000 15.0000 2774.2927 11.9455 0.0000 -30.0000 15.0000 2796.1365 11.9408 7.5000 -30.0000 15.0000 2794.0891 11.9472 -7.5000 -22.5000 15.0000 2833.3596 11.7915 0.0000 -22.5000 15.0000 2879.4736 11.8968 7.5000 -22.5000 15.0000 2865.9170 11.8339 -7.5000 -15.0000 15.0000 2872.6172 11.6578 0.0000 -15.0000 15.0000 2960.1440 11.8311 7.5000 -15.0000 15.0000 2913.8743 11.7298 -7.5000 -7.5000 15.0000 2874.5337 11.8182 0.0000 -7.5000 15.0000 2966.1016 11.9213 7.5000 -7.5000 15.0000 2911.1406 11.8584 -7.5000 0.0000 15.0000 2811.1453 12.2836 0.0000 0.0000 15.0000 2880.2148 12.2638 7.5000 0.0000 15.0000 2835.7461 12.2649 -7.5000 7.5000 15.0000 2718.7405 12.9508 0.0000 7.5000 15.0000 2764.8960 12.8306 7.5000 7.5000 15.0000 2732.8169 12.8908 -7.5000 15.0000 15.0000 2592.3552 13.9908 0.0000 15.0000 15.0000 2617.6516 13.8180 7.5000 15.0000 15.0000 2603.7881 13.8814 -7.5000 22.5000 15.0000 2471.5261 15.3994 0.0000 22.5000 15.0000 2487.3455 15.1497 7.5000 22.5000 15.0000 2474.7104 15.2235 -7.5000 30.0000 15.0000 2344.4917 17.2434 0.0000 30.0000 15.0000 2361.6052 16.9382 7.5000 30.0000 15.0000 2347.3833 17.0861 -7.5000 37.5000 15.0000 2197.3015 19.5720 0.0000 37.5000 15.0000 2216.3635 19.2846 7.5000 37.5000 15.0000 2203.6460 19.4465 -7.5000 45.0000 15.0000 2027.2260 22.5315 0.0000 45.0000 15.0000 2052.0005 22.1986 7.5000 45.0000 15.0000 2040.6412 22.4411 -7.5000 -45.0000 22.5000 2609.6687 13.0372 0.0000 -45.0000 22.5000 2627.7021 13.0033 7.5000 -45.0000 22.5000 2621.1040 13.0549 -7.5000 -37.5000 22.5000 2704.2212 12.4004 0.0000 -37.5000 22.5000 2715.7666 12.3888 7.5000 -37.5000 22.5000 2711.7910 12.4366 -7.5000 -30.0000 22.5000 2768.6951 12.0758 0.0000 -30.0000 22.5000 2786.7209 12.0537 7.5000 -30.0000 22.5000 2777.0613 12.0942 -7.5000 -22.5000 22.5000 2826.7693 11.8647 0.0000 -22.5000 22.5000 2861.8313 11.9317 7.5000 -22.5000 22.5000 2844.5176 11.9116 -7.5000 -15.0000 22.5000 2866.8567 11.7304 0.0000 -15.0000 22.5000 2929.2109 11.8056 7.5000 -15.0000 22.5000 2890.2603 11.8015 -7.5000 -7.5000 22.5000 2866.3987 11.9973 0.0000 -7.5000 22.5000 2934.4944 12.0031 7.5000 -7.5000 22.5000 2891.7915 12.0367 -7.5000 0.0000 22.5000 2796.3708 12.5332 0.0000 0.0000 22.5000 2848.6248 12.4700 7.5000 0.0000 22.5000 2818.1965 12.5152 -7.5000 7.5000 22.5000 2695.9314 13.2325 0.0000 7.5000 22.5000 2730.0044 13.1014 7.5000 7.5000 22.5000 2708.4817 13.1803 -7.5000 15.0000 22.5000 2565.9241 14.2391 0.0000 15.0000 22.5000 2589.6748 14.0588 7.5000 15.0000 22.5000 2573.1436 14.1613 -7.5000 22.5000 22.5000 2439.8140 15.6109 0.0000 22.5000 22.5000 2451.9724 15.3592 7.5000 22.5000 22.5000 2444.6675 15.4603 -7.5000 30.0000 22.5000 2314.0378 17.4015 0.0000 30.0000 22.5000 2326.0425 17.0724 7.5000 30.0000 22.5000 2315.4258 17.2202 -7.5000 37.5000 22.5000 2164.5500 19.6525 0.0000 37.5000 22.5000 2180.9878 19.3502 7.5000 37.5000 22.5000 2173.9556 19.4898 -7.5000 45.0000 22.5000 1997.5551 22.6891 0.0000 45.0000 22.5000 2021.7919 22.3257 7.5000 45.0000 22.5000 2009.1595 22.5701 -7.5000 -45.0000 30.0000 2600.7026 13.3316 0.0000 -45.0000 30.0000 2616.9114 13.2502 7.5000 -45.0000 30.0000 2615.7178 13.3188 -7.5000 -37.5000 30.0000 2694.9338 12.6570 0.0000 -37.5000 30.0000 2700.0989 12.5909 7.5000 -37.5000 30.0000 2698.4043 12.6594 -7.5000 -30.0000 30.0000 2749.4690 12.3258 0.0000 -30.0000 30.0000 2759.2932 12.2686 7.5000 -30.0000 30.0000 2755.1821 12.3275 -7.5000 -22.5000 30.0000 2793.8250 12.0995 0.0000 -22.5000 30.0000 2820.0417 12.0622 7.5000 -22.5000 30.0000 2803.6726 12.0729 -7.5000 -15.0000 30.0000 2829.8091 12.0114 0.0000 -15.0000 30.0000 2869.0474 11.9474 7.5000 -15.0000 30.0000 2842.6333 11.9990 -7.5000 -7.5000 30.0000 2823.8164 12.3095 0.0000 -7.5000 30.0000 2865.8447 12.2254 7.5000 -7.5000 30.0000 2836.6956 12.2876 -7.5000 0.0000 30.0000 2749.7568 12.8485 0.0000 0.0000 30.0000 2786.3784 12.7653 7.5000 0.0000 30.0000 2765.2422 12.8200 -7.5000 7.5000 30.0000 2650.4001 13.6247 0.0000 7.5000 30.0000 2681.1221 13.5072 7.5000 7.5000 30.0000 2660.7200 13.5886 -7.5000 15.0000 30.0000 2524.5208 14.6610 0.0000 15.0000 30.0000 2549.5051 14.4976 7.5000 15.0000 30.0000 2532.8159 14.6181 -7.5000 22.5000 30.0000 2395.3428 16.0302 0.0000 22.5000 30.0000 2415.9099 15.8161 7.5000 22.5000 30.0000 2402.5754 15.9352 -7.5000 30.0000 30.0000 2265.7600 17.7889 0.0000 30.0000 30.0000 2286.4053 17.4969 7.5000 30.0000 30.0000 2273.5537 17.6308 -7.5000 37.5000 30.0000 2117.7393 20.0377 0.0000 37.5000 30.0000 2132.0330 19.7199 7.5000 37.5000 30.0000 2122.6050 19.8637 -7.5000 45.0000 30.0000 1951.1387 23.0106 0.0000 45.0000 30.0000 1971.5631 22.7229 7.5000 45.0000 30.0000 1964.7423 22.9064 -7.5000 -45.0000 37.5000 2575.5215 13.8158 0.0000 -45.0000 37.5000 2591.8635 13.5891 7.5000 -45.0000 37.5000 2593.5220 13.6814 -7.5000 -37.5000 37.5000 2666.0234 13.0864 0.0000 -37.5000 37.5000 2676.4316 12.9049 7.5000 -37.5000 37.5000 2675.2759 13.0012 -7.5000 -30.0000 37.5000 2718.9648 12.7040 0.0000 -30.0000 37.5000 2732.2014 12.5881 7.5000 -30.0000 37.5000 2729.5342 12.6255 -7.5000 -22.5000 37.5000 2749.6223 12.4596 0.0000 -22.5000 37.5000 2773.6250 12.3471 7.5000 -22.5000 37.5000 2761.3804 12.3859 -7.5000 -15.0000 37.5000 2771.5625 12.4404 0.0000 -15.0000 37.5000 2798.5110 12.2881 7.5000 -15.0000 37.5000 2777.1248 12.3369 -7.5000 -7.5000 37.5000 2752.7446 12.7683 0.0000 -7.5000 37.5000 2776.6262 12.6061 7.5000 -7.5000 37.5000 2759.1453 12.6559 -7.5000 0.0000 37.5000 2672.5032 13.3450 0.0000 0.0000 37.5000 2702.9143 13.1974 7.5000 0.0000 37.5000 2686.3293 13.2450 -7.5000 7.5000 37.5000 2581.8076 14.1649 0.0000 7.5000 37.5000 2609.6277 14.0557 7.5000 7.5000 37.5000 2595.3564 14.1233 -7.5000 15.0000 37.5000 2475.0413 15.2552 0.0000 15.0000 37.5000 2500.0745 15.1094 7.5000 15.0000 37.5000 2484.9490 15.2329 -7.5000 22.5000 37.5000 2354.3308 16.6504 0.0000 22.5000 37.5000 2372.5154 16.4739 7.5000 22.5000 37.5000 2359.8879 16.5720 -7.5000 30.0000 37.5000 2221.4021 18.3866 0.0000 30.0000 37.5000 2238.2095 18.1034 7.5000 30.0000 37.5000 2229.4802 18.2231 -7.5000 37.5000 37.5000 2063.6448 20.6655 0.0000 37.5000 37.5000 2082.3928 20.3998 7.5000 37.5000 37.5000 2074.7996 20.4946 -7.5000 45.0000 37.5000 1906.8203 23.6380 0.0000 45.0000 37.5000 1927.3217 23.3748 7.5000 45.0000 37.5000 1918.2480 23.5813 -7.5000 -45.0000 45.0000 2537.7908 14.4412 0.0000 -45.0000 45.0000 2546.4883 14.0661 7.5000 -45.0000 45.0000 2548.2419 14.1753 -7.5000 -37.5000 45.0000 2624.1614 13.6867 0.0000 -37.5000 45.0000 2637.1975 13.3884 7.5000 -37.5000 45.0000 2636.5566 13.4689 -7.5000 -30.0000 45.0000 2672.1501 13.2476 0.0000 -30.0000 45.0000 2686.5188 13.0410 7.5000 -30.0000 45.0000 2682.2224 13.0885 -7.5000 -22.5000 45.0000 2693.6816 13.0330 0.0000 -22.5000 45.0000 2716.4119 12.8417 7.5000 -22.5000 45.0000 2698.9485 12.9012 -7.5000 -15.0000 45.0000 2697.1116 13.0292 0.0000 -15.0000 45.0000 2718.9619 12.8265 7.5000 -15.0000 45.0000 2697.7681 12.8841 -7.5000 -7.5000 45.0000 2670.0757 13.3870 0.0000 -7.5000 45.0000 2689.2944 13.1412 7.5000 -7.5000 45.0000 2675.2507 13.1851 -7.5000 0.0000 45.0000 2591.8640 14.0205 0.0000 0.0000 45.0000 2619.7014 13.7841 7.5000 0.0000 45.0000 2606.4727 13.8363 -7.5000 7.5000 45.0000 2507.0813 14.9471 0.0000 7.5000 45.0000 2534.0918 14.7362 7.5000 7.5000 45.0000 2520.2151 14.7985 -7.5000 15.0000 45.0000 2408.0801 16.0838 0.0000 15.0000 45.0000 2438.3479 15.8636 7.5000 15.0000 45.0000 2415.6489 15.9474 -7.5000 22.5000 45.0000 2295.3364 17.4909 0.0000 22.5000 45.0000 2314.9026 17.2598 7.5000 22.5000 45.0000 2299.8525 17.3571 -7.5000 30.0000 45.0000 2160.1348 19.2716 0.0000 30.0000 45.0000 2177.9822 19.0026 7.5000 30.0000 45.0000 2164.1602 19.0932 -7.5000 37.5000 45.0000 2008.2075 21.6836 0.0000 37.5000 45.0000 2033.3549 21.3921 7.5000 37.5000 45.0000 2017.0959 21.5069 -7.5000 45.0000 45.0000 1861.1337 24.7249 0.0000 45.0000 45.0000 1879.2709 24.4703 7.5000 45.0000 45.0000 1869.7219 24.6703 -7.5000 -45.0000 52.5000 2488.8530 15.2502 0.0000 -45.0000 52.5000 2498.7585 14.7670 7.5000 -45.0000 52.5000 2492.9885 14.9304 -7.5000 -37.5000 52.5000 2564.0840 14.4169 0.0000 -37.5000 52.5000 2577.1882 14.0452 7.5000 -37.5000 52.5000 2574.4788 14.1736 -7.5000 -30.0000 52.5000 2606.5667 13.9771 0.0000 -30.0000 52.5000 2615.9233 13.6741 7.5000 -30.0000 52.5000 2612.2527 13.7908 -7.5000 -22.5000 52.5000 2626.7688 13.7447 0.0000 -22.5000 52.5000 2641.4626 13.4627 7.5000 -22.5000 52.5000 2622.2117 13.6033 -7.5000 -15.0000 52.5000 2621.1060 13.7726 0.0000 -15.0000 52.5000 2638.3167 13.5469 7.5000 -15.0000 52.5000 2619.7422 13.6447 -7.5000 -7.5000 52.5000 2583.5857 14.1671 0.0000 -7.5000 52.5000 2603.9575 13.9174 7.5000 -7.5000 52.5000 2588.1533 13.9746 -7.5000 0.0000 52.5000 2514.8325 14.8618 0.0000 0.0000 52.5000 2540.1726 14.6305 7.5000 0.0000 52.5000 2525.6655 14.6789 -7.5000 7.5000 52.5000 2435.4309 15.8754 0.0000 7.5000 52.5000 2459.4028 15.6298 7.5000 7.5000 52.5000 2444.7283 15.6982 -7.5000 15.0000 52.5000 2337.4346 17.0778 0.0000 15.0000 52.5000 2370.5974 16.8201 7.5000 15.0000 52.5000 2346.1812 16.9229 -7.5000 22.5000 52.5000 2229.5649 18.4858 0.0000 22.5000 52.5000 2257.4080 18.2278 7.5000 22.5000 52.5000 2234.7876 18.3239 -7.5000 30.0000 52.5000 2092.8516 20.3917 0.0000 30.0000 52.5000 2114.9792 20.1099 7.5000 30.0000 52.5000 2096.8818 20.1812 -7.5000 37.5000 52.5000 1953.7177 23.0340 0.0000 37.5000 52.5000 1975.0330 22.7671 7.5000 37.5000 52.5000 1957.5269 22.8121 -7.5000 45.0000 52.5000 1809.9048 26.2631 0.0000 45.0000 52.5000 1830.1312 26.0952 7.5000 45.0000 52.5000 1817.5730 26.0930 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 1283 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 rotation matrix determinant 1.000000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 1283 decimal 503 hex parameters 0.0000 -7.5000 15.0000 0.0000 0.0000 0.0000 eta,q 0.93008 11.91625 niter,ni,del,rscale 5 3 12.0000 1.2000 parameter 2 0.572607 -> 0.500000 qaram 1.1500 parameters 1.3300 -10.9500 14.1727 -1.6995 1.3551 0.4278 eta,q 0.93814 11.91443 0.0895 0.0657 0.0733 0.0651 0.0717 0.0652 0.0785 0.0637 0.0681 0.0625 0.0687 0.0629 0.0706 0.0633 0.0636 0.0622 0.0653 0.0617 0.0673 0.0669 0.0637 0.0627 0.0623 0.0617 0.0676 0.0732 0.0681 0.0640 0.0619 0.0623 0.0705 0.0813 0.0738 0.0672 0.0636 0.0628 0.0752 0.0906 0.0777 0.0713 0.0669 0.0639 niter,ni,del,rscale 5 3 12.0000 1.2000 parameters 1.1077 -10.7041 13.6626 -2.8240 1.5209 0.5654 eta,q 0.93894 11.97423 0.0750 0.0757 0.0717 0.0648 0.0689 0.0641 0.0670 0.0711 0.0674 0.0625 0.0660 0.0624 0.0626 0.0651 0.0630 0.0609 0.0630 0.0613 0.0619 0.0618 0.0616 0.0616 0.0611 0.0610 0.0638 0.0617 0.0645 0.0623 0.0622 0.0617 0.0686 0.0681 0.0700 0.0655 0.0651 0.0622 0.0768 0.0757 0.0755 0.0689 0.0685 0.0637 niter,ni,del,rscale 4 3 12.0000 1.2000 parameters 1.0102 -10.2101 13.1950 -4.1771 1.7367 0.3407 eta,q 0.94013 12.05263 0.0749 0.0754 0.0700 0.0631 0.0676 0.0636 0.0668 0.0720 0.0661 0.0616 0.0648 0.0618 0.0623 0.0657 0.0625 0.0601 0.0621 0.0602 0.0611 0.0610 0.0605 0.0607 0.0600 0.0599 0.0628 0.0607 0.0629 0.0616 0.0609 0.0610 0.0676 0.0667 0.0681 0.0643 0.0638 0.0622 0.0757 0.0746 0.0738 0.0682 0.0671 0.0639 niter,ni,del,rscale 3 3 12.0000 1.2000 parameters 0.8780 -9.4903 12.6441 -6.1520 2.1693 0.2323 eta,q 0.94114 12.10947 0.0737 0.0759 0.0679 0.0605 0.0666 0.0637 0.0657 0.0718 0.0635 0.0599 0.0633 0.0611 0.0613 0.0662 0.0606 0.0589 0.0604 0.0594 0.0599 0.0599 0.0590 0.0592 0.0589 0.0589 0.0612 0.0597 0.0613 0.0609 0.0596 0.0596 0.0663 0.0659 0.0662 0.0630 0.0617 0.0614 0.0754 0.0731 0.0718 0.0676 0.0649 0.0640 niter,ni,del,rscale 2 3 12.0000 1.2000 parameter 4 0.502236 -> 0.500000 qaram 1.1500 parameters 0.6845 -8.4666 11.7565 -9.6020 2.3875 -0.8144 eta,q 0.94367 11.98818 0.0735 0.0763 0.0653 0.0573 0.0652 0.0609 0.0650 0.0717 0.0602 0.0567 0.0605 0.0576 0.0599 0.0659 0.0580 0.0570 0.0578 0.0563 0.0589 0.0588 0.0575 0.0573 0.0569 0.0569 0.0603 0.0583 0.0607 0.0591 0.0579 0.0592 0.0658 0.0640 0.0652 0.0620 0.0600 0.0610 0.0761 0.0711 0.0700 0.0659 0.0638 0.0628 niter,ni,del,rscale 2 3 12.0000 1.2000 parameters 0.8368 -7.1584 10.9350 -10.1841 2.3232 -1.0132 eta,q 0.94545 11.97722 0.0755 0.0785 0.0659 0.0614 0.0642 0.0613 0.0668 0.0717 0.0599 0.0575 0.0589 0.0572 0.0601 0.0633 0.0561 0.0548 0.0554 0.0548 0.0563 0.0562 0.0550 0.0548 0.0546 0.0546 0.0575 0.0556 0.0594 0.0564 0.0558 0.0562 0.0641 0.0611 0.0661 0.0594 0.0591 0.0589 0.0752 0.0686 0.0719 0.0636 0.0647 0.0610 niter,ni,del,rscale 1 3 12.0000 1.2000 parameters 0.9279 -6.7478 10.8931 -10.5361 2.2560 -1.0244 eta,q 0.94546 11.98841 0.0760 0.0756 0.0694 0.0620 0.0643 0.0619 0.0660 0.0673 0.0625 0.0580 0.0590 0.0576 0.0581 0.0585 0.0575 0.0552 0.0555 0.0550 0.0546 0.0545 0.0546 0.0546 0.0545 0.0545 0.0566 0.0579 0.0566 0.0560 0.0555 0.0561 0.0644 0.0646 0.0628 0.0594 0.0590 0.0586 0.0756 0.0711 0.0700 0.0633 0.0650 0.0610 registration optimization eta report parameter search radius 6.0000 6.9000 6.0000 6.9000 6.0000 6.0000 100000*second partial in parameter space 58. 37. 40. 17. 28. 19. 0.0760 0.0756 0.0694 0.0620 0.0643 0.0619 0.0660 0.0673 0.0625 0.0580 0.0590 0.0576 0.0581 0.0585 0.0575 0.0552 0.0555 0.0550 0.0546 0.0545 0.0546 0.0546 0.0545 0.0545 0.0566 0.0579 0.0566 0.0560 0.0555 0.0561 0.0644 0.0646 0.0628 0.0594 0.0590 0.0586 0.0756 0.0711 0.0700 0.0633 0.0650 0.0610 0.9279 -6.7478 10.8931 -10.5361 2.2560 -1.0244 eta,q 0.94546 11.98841 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 3335 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 3335 decimal D07 hex parameters 0.9279 -6.7478 10.8931 -0.0935 -1.7146 -1.7622 2.4774 -3.5426 -1.7865 18.3517 3.9365 -18.2713 eta,q 0.94193 11.96177 niter,ni,del,rscale 5 3 5.0000 1.2000 parameter 5 11.293865 -> 0.500000 qaram 1.1500 parameter 6 0.720445 -> 0.500000 qaram 1.1500 parameter 10 0.549171 -> 0.500000 qaram 1.1500 parameters 0.8358 -6.6906 11.2621 0.3998 -5.8546 -5.9022 0.2911 -3.6614 -0.8054 14.2117 3.3937 -18.1622 eta,q 0.95250 11.68740 0.0615 0.0602 0.0607 0.0620 0.0461 0.0489 0.0498 0.0535 0.0516 0.0484 0.0486 0.0489 0.0596 0.0591 0.0594 0.0602 0.0498 0.0488 0.0490 0.0508 0.0501 0.0476 0.0479 0.0481 0.0584 0.0584 0.0585 0.0588 0.0538 0.0493 0.0487 0.0492 0.0491 0.0477 0.0476 0.0476 0.0581 0.0581 0.0581 0.0580 0.0579 0.0508 0.0489 0.0486 0.0487 0.0486 0.0475 0.0475 0.0586 0.0582 0.0581 0.0580 0.0620 0.0537 0.0496 0.0493 0.0487 0.0503 0.0477 0.0477 0.0599 0.0589 0.0585 0.0591 0.0664 0.0577 0.0509 0.0510 0.0492 0.0525 0.0482 0.0481 0.0621 0.0601 0.0595 0.0613 0.0708 0.0622 0.0526 0.0538 0.0504 0.0554 0.0490 0.0487 niter,ni,del,rscale 7 3 5.0000 1.2000 parameter 5 2.444322 -> 0.500000 qaram 1.3225 parameters 0.9259 -6.9238 10.6480 1.9693 -10.6156 -7.5584 0.3577 -3.5178 -0.3754 15.2222 3.6804 -18.7910 eta,q 0.95935 11.55386 0.0517 0.0499 0.0485 0.0517 0.0379 0.0435 0.0436 0.0461 0.0438 0.0474 0.0421 0.0417 0.0495 0.0484 0.0477 0.0499 0.0399 0.0418 0.0420 0.0432 0.0422 0.0441 0.0413 0.0410 0.0480 0.0475 0.0473 0.0483 0.0430 0.0410 0.0411 0.0415 0.0412 0.0418 0.0409 0.0407 0.0475 0.0475 0.0474 0.0473 0.0470 0.0406 0.0408 0.0408 0.0408 0.0408 0.0407 0.0407 0.0479 0.0481 0.0481 0.0470 0.0515 0.0414 0.0411 0.0412 0.0410 0.0409 0.0408 0.0409 0.0491 0.0493 0.0492 0.0476 0.0561 0.0442 0.0420 0.0429 0.0418 0.0423 0.0412 0.0414 0.0511 0.0509 0.0507 0.0493 0.0610 0.0486 0.0435 0.0458 0.0432 0.0448 0.0419 0.0421 niter,ni,del,rscale 7 3 5.0000 1.2000 parameter 5 0.909941 -> 0.500000 qaram 1.5209 parameters 0.9791 -6.3009 10.2802 2.5592 -16.0907 -7.4840 0.4384 -3.3743 -0.5838 16.9002 3.6878 -20.0996 eta,q 0.96401 11.36949 0.0450 0.0459 0.0420 0.0443 0.0363 0.0410 0.0395 0.0421 0.0394 0.0444 0.0375 0.0370 0.0426 0.0435 0.0409 0.0425 0.0363 0.0386 0.0378 0.0391 0.0378 0.0408 0.0367 0.0364 0.0412 0.0417 0.0403 0.0411 0.0374 0.0371 0.0368 0.0372 0.0367 0.0381 0.0362 0.0360 0.0407 0.0406 0.0404 0.0403 0.0402 0.0364 0.0364 0.0364 0.0364 0.0364 0.0360 0.0360 0.0411 0.0404 0.0409 0.0402 0.0445 0.0365 0.0368 0.0369 0.0369 0.0361 0.0362 0.0364 0.0424 0.0409 0.0419 0.0413 0.0495 0.0380 0.0377 0.0387 0.0380 0.0374 0.0367 0.0371 0.0446 0.0424 0.0433 0.0435 0.0547 0.0414 0.0394 0.0418 0.0397 0.0401 0.0375 0.0380 niter,ni,del,rscale 7 3 5.0000 1.2000 parameters 0.9907 -6.0282 10.2983 3.0592 -19.3934 -7.3441 0.5273 -3.3199 -0.7955 17.7818 3.6916 -20.1561 eta,q 0.96464 11.23845 0.0405 0.0412 0.0385 0.0397 0.0387 0.0404 0.0384 0.0411 0.0384 0.0425 0.0369 0.0368 0.0380 0.0386 0.0371 0.0381 0.0366 0.0379 0.0368 0.0382 0.0368 0.0393 0.0361 0.0361 0.0365 0.0368 0.0362 0.0367 0.0355 0.0362 0.0358 0.0363 0.0358 0.0368 0.0356 0.0356 0.0360 0.0360 0.0359 0.0359 0.0358 0.0355 0.0355 0.0355 0.0355 0.0355 0.0354 0.0354 0.0365 0.0361 0.0362 0.0359 0.0380 0.0357 0.0358 0.0360 0.0359 0.0356 0.0356 0.0355 0.0380 0.0373 0.0371 0.0370 0.0424 0.0371 0.0367 0.0379 0.0371 0.0373 0.0361 0.0361 0.0403 0.0393 0.0384 0.0392 0.0483 0.0406 0.0383 0.0411 0.0387 0.0404 0.0369 0.0370 niter,ni,del,rscale 6 3 5.0000 1.2000 parameters 0.9576 -6.0108 10.4528 3.0348 -19.8913 -7.1997 0.5063 -3.3432 -0.9053 17.9013 3.6606 -20.0127 eta,q 0.96463 11.21589 0.0396 0.0395 0.0382 0.0385 0.0413 0.0405 0.0382 0.0409 0.0384 0.0415 0.0369 0.0369 0.0372 0.0373 0.0368 0.0371 0.0382 0.0378 0.0366 0.0380 0.0367 0.0385 0.0361 0.0362 0.0358 0.0359 0.0358 0.0360 0.0362 0.0361 0.0357 0.0361 0.0357 0.0363 0.0356 0.0356 0.0354 0.0354 0.0354 0.0353 0.0353 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0359 0.0358 0.0356 0.0355 0.0359 0.0356 0.0357 0.0360 0.0358 0.0360 0.0356 0.0355 0.0374 0.0372 0.0363 0.0367 0.0385 0.0371 0.0366 0.0379 0.0369 0.0380 0.0361 0.0360 0.0398 0.0394 0.0376 0.0390 0.0431 0.0406 0.0382 0.0411 0.0385 0.0415 0.0369 0.0369 niter,ni,del,rscale 5 3 5.0000 1.2000 parameters 0.9434 -6.0269 10.5173 2.9875 -19.9518 -7.1547 0.4962 -3.3490 -0.9214 17.8917 3.6603 -19.9268 eta,q 0.96463 11.21085 0.0397 0.0393 0.0380 0.0385 0.0417 0.0404 0.0382 0.0409 0.0385 0.0414 0.0369 0.0369 0.0372 0.0372 0.0366 0.0371 0.0385 0.0378 0.0366 0.0380 0.0368 0.0384 0.0361 0.0362 0.0358 0.0359 0.0357 0.0360 0.0363 0.0361 0.0357 0.0361 0.0357 0.0363 0.0356 0.0356 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0359 0.0358 0.0356 0.0355 0.0358 0.0356 0.0357 0.0359 0.0357 0.0360 0.0356 0.0355 0.0374 0.0372 0.0365 0.0367 0.0380 0.0372 0.0366 0.0379 0.0368 0.0382 0.0361 0.0360 0.0397 0.0395 0.0378 0.0390 0.0424 0.0407 0.0382 0.0411 0.0385 0.0417 0.0369 0.0369 niter,ni,del,rscale 4 3 5.0000 1.2000 parameters 0.9398 -6.0370 10.5376 2.9746 -19.9637 -7.1420 0.4931 -3.3525 -0.9225 17.8788 3.6614 -19.8931 eta,q 0.96462 11.20925 0.0397 0.0393 0.0380 0.0385 0.0418 0.0403 0.0382 0.0409 0.0385 0.0414 0.0369 0.0369 0.0373 0.0372 0.0366 0.0371 0.0385 0.0377 0.0366 0.0380 0.0368 0.0384 0.0361 0.0362 0.0358 0.0359 0.0357 0.0360 0.0363 0.0361 0.0357 0.0361 0.0357 0.0363 0.0356 0.0356 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0359 0.0358 0.0357 0.0355 0.0358 0.0356 0.0357 0.0359 0.0357 0.0360 0.0356 0.0355 0.0374 0.0372 0.0365 0.0367 0.0380 0.0373 0.0366 0.0379 0.0368 0.0382 0.0361 0.0361 0.0396 0.0395 0.0378 0.0389 0.0424 0.0408 0.0382 0.0410 0.0385 0.0417 0.0369 0.0370 registration optimization eta report parameter search radius 2.4000 2.4000 2.4000 7.2000 10.9503 8.2800 7.2000 7.2000 7.2000 8.2800 7.2000 7.2000 100000*second partial in parameter space 75. 70. 44. 6. 6. 8. 5. 11. 6. 9. 3. 3. 0.0397 0.0393 0.0380 0.0385 0.0418 0.0403 0.0382 0.0409 0.0385 0.0414 0.0369 0.0369 0.0373 0.0372 0.0366 0.0371 0.0385 0.0377 0.0366 0.0380 0.0368 0.0384 0.0361 0.0362 0.0358 0.0359 0.0357 0.0360 0.0363 0.0361 0.0357 0.0361 0.0357 0.0363 0.0356 0.0356 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0359 0.0358 0.0357 0.0355 0.0358 0.0356 0.0357 0.0359 0.0357 0.0360 0.0356 0.0355 0.0374 0.0372 0.0365 0.0367 0.0380 0.0373 0.0366 0.0379 0.0368 0.0382 0.0361 0.0361 0.0396 0.0395 0.0378 0.0389 0.0424 0.0408 0.0382 0.0410 0.0385 0.0417 0.0369 0.0370 0.9398 -6.0370 10.5376 2.9746 -19.9637 -7.1420 0.4931 -3.3525 -0.9225 17.8788 3.6614 -19.8931 eta,q 0.96462 11.20925 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 2311 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 2311 decimal 907 hex parameters 0.9398 -6.0370 10.5376 2.9746 -19.9637 -7.1420 0.4931 -3.3525 -0.9225 17.8788 3.6614 -19.8931 eta,q 0.96462 11.20924 niter,ni,del,rscale 5 3 5.0000 0.8000 parameters 0.9161 -6.0241 10.5317 3.4288 -19.2167 -6.6892 0.4911 -3.3410 -0.8687 17.9035 3.6154 -19.9693 eta,q 0.96474 11.28810 0.0373 0.0372 0.0365 0.0371 0.0369 0.0371 0.0365 0.0379 0.0368 0.0375 0.0360 0.0359 0.0362 0.0362 0.0359 0.0363 0.0361 0.0362 0.0358 0.0365 0.0359 0.0363 0.0356 0.0356 0.0355 0.0356 0.0355 0.0357 0.0356 0.0356 0.0354 0.0356 0.0354 0.0355 0.0353 0.0353 0.0354 0.0354 0.0354 0.0354 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0356 0.0356 0.0355 0.0353 0.0353 0.0353 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0363 0.0362 0.0359 0.0358 0.0356 0.0357 0.0358 0.0364 0.0359 0.0363 0.0356 0.0356 0.0374 0.0372 0.0365 0.0367 0.0362 0.0366 0.0365 0.0379 0.0367 0.0375 0.0360 0.0360 niter,ni,del,rscale 4 3 5.0000 0.7000 parameters 0.9222 -5.9632 10.5404 3.5113 -19.1392 -6.6341 0.5043 -3.3149 -0.8554 17.9601 3.5804 -20.0084 eta,q 0.96476 11.30040 0.0368 0.0368 0.0362 0.0366 0.0362 0.0365 0.0362 0.0373 0.0364 0.0370 0.0358 0.0358 0.0359 0.0360 0.0357 0.0359 0.0357 0.0358 0.0357 0.0362 0.0358 0.0361 0.0355 0.0355 0.0354 0.0355 0.0354 0.0355 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0354 0.0354 0.0353 0.0353 0.0353 0.0353 0.0353 0.0354 0.0354 0.0354 0.0353 0.0353 0.0360 0.0358 0.0357 0.0357 0.0356 0.0357 0.0357 0.0361 0.0357 0.0360 0.0355 0.0355 0.0368 0.0366 0.0361 0.0366 0.0362 0.0365 0.0362 0.0373 0.0364 0.0369 0.0358 0.0358 niter,ni,del,rscale 3 3 5.0000 0.6000 parameters 0.9206 -5.9446 10.5377 3.5997 -19.0987 -6.5604 0.5018 -3.3033 -0.8302 17.9783 3.5556 -20.0400 eta,q 0.96476 11.30968 0.0364 0.0363 0.0359 0.0362 0.0360 0.0361 0.0360 0.0368 0.0361 0.0365 0.0356 0.0356 0.0357 0.0358 0.0355 0.0358 0.0356 0.0357 0.0355 0.0360 0.0356 0.0358 0.0354 0.0354 0.0354 0.0354 0.0353 0.0354 0.0353 0.0354 0.0353 0.0354 0.0353 0.0354 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0354 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0354 0.0353 0.0354 0.0353 0.0353 0.0358 0.0357 0.0356 0.0356 0.0355 0.0356 0.0356 0.0359 0.0356 0.0358 0.0354 0.0354 0.0364 0.0363 0.0359 0.0362 0.0359 0.0361 0.0360 0.0368 0.0361 0.0365 0.0357 0.0357 niter,ni,del,rscale 2 3 5.0000 0.5000 parameters 0.9173 -5.9302 10.5408 3.6815 -19.0488 -6.4993 0.5069 -3.2906 -0.8150 17.9796 3.5687 -20.0512 eta,q 0.96476 11.31802 0.0360 0.0360 0.0357 0.0360 0.0357 0.0358 0.0357 0.0363 0.0358 0.0361 0.0355 0.0355 0.0356 0.0356 0.0354 0.0356 0.0355 0.0355 0.0354 0.0357 0.0355 0.0356 0.0354 0.0354 0.0353 0.0353 0.0353 0.0354 0.0353 0.0353 0.0353 0.0354 0.0353 0.0353 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0356 0.0356 0.0354 0.0355 0.0354 0.0355 0.0355 0.0357 0.0355 0.0356 0.0354 0.0354 0.0360 0.0360 0.0357 0.0359 0.0357 0.0358 0.0357 0.0363 0.0358 0.0362 0.0355 0.0355 niter,ni,del,rscale 1 3 5.0000 0.4000 parameters 0.9158 -5.9236 10.5426 3.7425 -19.0078 -6.4470 0.4988 -3.2852 -0.8036 17.9826 3.5789 -20.0500 eta,q 0.96477 11.32441 0.0358 0.0357 0.0355 0.0357 0.0356 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 0.0355 0.0355 0.0354 0.0355 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0355 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0358 0.0357 0.0355 0.0357 0.0355 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 registration optimization eta report parameter search radius 0.8000 0.8000 0.8000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 100000*second partial in parameter space 82. 76. 47. 8. 5. 7. 5. 12. 7. 10. 3. 3. 0.0358 0.0357 0.0355 0.0357 0.0356 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 0.0355 0.0355 0.0354 0.0355 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0355 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0358 0.0357 0.0355 0.0357 0.0355 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 0.9158 -5.9236 10.5426 3.7425 -19.0078 -6.4470 0.4988 -3.2852 -0.8036 17.9826 3.5789 -20.0500 eta,q 0.96477 11.32441 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 2311 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 2311 decimal 907 hex parameters 0.9158 -5.9236 10.5426 3.7425 -19.0078 -6.4470 0.4988 -3.2852 -0.8036 17.9826 3.5789 -20.0500 eta,q 0.96477 11.32441 niter,ni,del,rscale 5 3 5.0000 0.8000 parameters 0.9373 -5.9372 10.5541 3.4051 -19.1921 -6.6931 0.4971 -3.3211 -0.8563 17.9915 3.5663 -20.0326 eta,q 0.96475 11.29286 0.0374 0.0371 0.0364 0.0367 0.0364 0.0367 0.0365 0.0378 0.0367 0.0375 0.0360 0.0360 0.0362 0.0361 0.0358 0.0360 0.0358 0.0359 0.0358 0.0365 0.0359 0.0363 0.0356 0.0356 0.0355 0.0354 0.0354 0.0355 0.0354 0.0354 0.0354 0.0356 0.0354 0.0355 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0355 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0361 0.0361 0.0358 0.0361 0.0358 0.0360 0.0358 0.0364 0.0359 0.0363 0.0356 0.0356 0.0372 0.0372 0.0364 0.0374 0.0367 0.0372 0.0365 0.0380 0.0368 0.0375 0.0360 0.0360 niter,ni,del,rscale 4 3 5.0000 0.7000 parameters 0.9241 -5.9468 10.5331 3.5103 -19.1486 -6.6376 0.5043 -3.3127 -0.8510 17.9843 3.5619 -20.0346 eta,q 0.96475 11.30082 0.0368 0.0367 0.0361 0.0366 0.0362 0.0365 0.0362 0.0373 0.0364 0.0370 0.0358 0.0358 0.0359 0.0359 0.0356 0.0359 0.0357 0.0358 0.0357 0.0362 0.0358 0.0361 0.0355 0.0355 0.0354 0.0354 0.0353 0.0355 0.0354 0.0354 0.0353 0.0355 0.0354 0.0355 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0355 0.0354 0.0354 0.0353 0.0353 0.0353 0.0353 0.0355 0.0354 0.0354 0.0353 0.0353 0.0360 0.0359 0.0357 0.0357 0.0356 0.0357 0.0357 0.0361 0.0358 0.0360 0.0355 0.0355 0.0368 0.0367 0.0362 0.0366 0.0362 0.0365 0.0362 0.0373 0.0364 0.0370 0.0358 0.0358 niter,ni,del,rscale 3 3 5.0000 0.6000 parameters 0.9207 -5.9394 10.5363 3.6007 -19.0983 -6.5627 0.5068 -3.3007 -0.8326 17.9848 3.5524 -20.0556 eta,q 0.96476 11.31000 0.0364 0.0363 0.0359 0.0362 0.0359 0.0361 0.0360 0.0368 0.0361 0.0365 0.0357 0.0356 0.0357 0.0357 0.0355 0.0358 0.0356 0.0357 0.0355 0.0360 0.0356 0.0358 0.0354 0.0354 0.0354 0.0354 0.0353 0.0354 0.0353 0.0354 0.0353 0.0354 0.0353 0.0354 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0354 0.0354 0.0353 0.0353 0.0353 0.0353 0.0353 0.0354 0.0353 0.0354 0.0353 0.0353 0.0358 0.0357 0.0355 0.0356 0.0355 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 0.0364 0.0363 0.0359 0.0362 0.0359 0.0361 0.0360 0.0368 0.0361 0.0365 0.0357 0.0356 niter,ni,del,rscale 2 3 5.0000 0.5000 parameters 0.9177 -5.9290 10.5391 3.6807 -19.0409 -6.4954 0.5093 -3.2895 -0.8136 17.9771 3.5540 -20.0530 eta,q 0.96477 11.31859 0.0360 0.0360 0.0357 0.0360 0.0357 0.0358 0.0357 0.0363 0.0358 0.0361 0.0355 0.0355 0.0356 0.0356 0.0354 0.0356 0.0355 0.0355 0.0354 0.0357 0.0355 0.0356 0.0354 0.0354 0.0353 0.0353 0.0353 0.0354 0.0353 0.0353 0.0353 0.0354 0.0353 0.0353 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0356 0.0356 0.0354 0.0355 0.0354 0.0355 0.0355 0.0357 0.0355 0.0356 0.0354 0.0354 0.0360 0.0360 0.0357 0.0359 0.0357 0.0358 0.0357 0.0363 0.0358 0.0362 0.0355 0.0355 niter,ni,del,rscale 1 3 5.0000 0.4000 parameters 0.9148 -5.9219 10.5421 3.7429 -18.9989 -6.4557 0.5026 -3.2827 -0.7946 17.9823 3.5662 -20.0650 eta,q 0.96477 11.32471 0.0358 0.0357 0.0355 0.0357 0.0355 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 0.0355 0.0354 0.0354 0.0355 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0355 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0358 0.0357 0.0355 0.0357 0.0355 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 registration optimization eta report parameter search radius 0.8000 0.8000 0.8000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 100000*second partial in parameter space 81. 76. 47. 8. 5. 7. 5. 12. 7. 10. 3. 3. 0.0358 0.0357 0.0355 0.0357 0.0355 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 0.0355 0.0354 0.0354 0.0355 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0352 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0353 0.0352 0.0355 0.0354 0.0354 0.0354 0.0354 0.0354 0.0354 0.0355 0.0354 0.0355 0.0353 0.0353 0.0358 0.0357 0.0355 0.0357 0.0355 0.0356 0.0355 0.0359 0.0356 0.0358 0.0354 0.0354 0.9148 -5.9219 10.5421 3.7429 -18.9989 -6.4557 0.5026 -3.2827 -0.7946 17.9823 3.5662 -20.0650 eta,q 0.96477 11.32471 --------------------------------------------------------------------- compute_vox2vox talsrcimg talsrcimg_to_711-2C_as_mni_average_305_t4 /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 --------------------------------------------------------------------- $Id: compute_vox2vox.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ Reading: talsrcimg.4dfp.ifh Reading: talsrcimg_to_711-2C_as_mni_average_305_t4 Reading: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.ifh Writing: talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt start time Thu Jul 15 11:44:51 BST 2010 end time Thu Jul 15 11:45:32 BST 2010 mpr2mni305 success -------------------------------------------- tkregister2_cmdl --mov nu.mgz --targ /Users/heatherreynolds/Applications/freesurfer/average/mni305.cor.mgz --xfmout transforms/talairach.auto.xfm --vox2vox talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt --noedit --reg talsrcimg.reg.tmp.dat tkregister_tcl /Users/heatherreynolds/Applications/freesurfer/lib/tcl/tkregister2.tcl Vox2Vox Matrix 1.037 0.005 0.033 -10.518; -0.008 0.810 -0.180 54.095; -0.036 0.201 0.935 -2.378; 0.000 0.000 0.000 1.000; target volume /Users/heatherreynolds/Applications/freesurfer/average/mni305.cor.mgz movable volume nu.mgz reg file talsrcimg.reg.tmp.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.86.2.12 2009/03/19 22:04:20 greve Exp $ Diagnostic Level -1 INFO: loading target /Users/heatherreynolds/Applications/freesurfer/average/mni305.cor.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable nu.mgz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.037 -0.033 0.005 0.882; 0.036 0.935 -0.201 10.478; -0.008 0.180 0.810 -5.742; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.037 -0.033 0.005 0.882; 0.036 0.935 -0.201 10.478; -0.008 0.180 0.810 -5.742; 0.000 0.000 0.000 1.000; Determinant 0.824477 subject = subject-unknown RegMat --------------------------- 1.037 -0.033 0.005 0.882; 0.036 0.935 -0.201 10.478; -0.008 0.180 0.810 -5.742; 0.000 0.000 0.000 1.000; register: file talsrcimg.reg.tmp.dat written talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt -> transforms/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt talsrcimg.4dfp.hdr talsrcimg.4dfp.ifh talsrcimg.4dfp.img talsrcimg.4dfp.img.rec talsrcimg.hdr talsrcimg.img talsrcimg.mat talsrcimg.reg.tmp.dat talsrcimg_g11.4dfp.hdr talsrcimg_g11.4dfp.ifh talsrcimg_g11.4dfp.img talsrcimg_g11.4dfp.img.rec talsrcimg_to_711-2C_as_mni_average_305_t4 -------------------------------------------- Thu Jul 15 11:45:32 BST 2010 talairach_avi done \n cp transforms/talairach.auto.xfm transforms/talairach.xfm \n #-------------------------------------------- #@# Talairach Failure Detection Thu Jul 15 11:45:33 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.7509, pval=0.6675 >= threshold=0.0050) \n awk -f /Users/heatherreynolds/Applications/freesurfer/bin/extract_talairach_avi_QA.awk /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri/transforms/talairach_avi.log \n TalAviQA: 0.96477 z-score: -3 #-------------------------------------------- #@# Intensity Normalization Thu Jul 15 11:45:33 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri \n mri_normalize -g 1 nu.mgz T1.mgz \n using max gradient = 1.000 reading from nu.mgz... normalizing image... talairach transform 0.963 0.033 0.002 -0.319; -0.033 1.019 0.253 14.531; 0.017 -0.226 1.178 -14.658; 0.000 0.000 0.000 1.000; INFO: Modifying talairach volume c_(r,a,s) based on average_305 building Voronoi diagram... performing soap bubble smoothing... 3d normalization pass 1 of 2 building Voronoi diagram... performing soap bubble smoothing... 3d normalization pass 2 of 2 building Voronoi diagram... performing soap bubble smoothing... writing output to T1.mgz 3D bias adjustment took 4 minutes and 2 seconds. MRIsplineNormalize(): npeaks = 9 Starting OpenSpline(): npoints = 9 white matter peak found at 111 gm peak at 55 (55), valley at 42 (42) csf peak at 28, setting threshold to 46 white matter peak found at 111 gm peak at 57 (57), valley at 43 (43) csf peak at 29, setting threshold to 47 #-------------------------------------------- #@# Skull Stripping Thu Jul 15 11:49:37 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri \n mri_em_register -skull nu.mgz /Users/heatherreynolds/Applications/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta \n aligning to atlas containing skull, setting unknown_nbr_spacing = 5 reading 1 input volumes... logging results to talairach_with_skull.log reading '/Users/heatherreynolds/Applications/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=12.0 skull bounding box = (36, 57, 23) --> (212, 205, 227) using (95, 106, 125) as brain centroid... mean wm in atlas = 126, using box (73,88,100) --> (116, 124,150) to find MRI wm before smoothing, mri peak at 119 after smoothing, mri peak at 118, scaling input intensities by 1.068 scaling channel 0 by 1.0678 initial log_p = -24791.0 ************************************************ First Search limited to translation only. ************************************************ using real data threshold=30.0 Found translation: (-0.6, -14.2, -13.1): log p = -20232.8 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-17997.8, old_max_log_p =-20232.8 (thresh=-20212.6) 0.933 -0.055 -0.073 23.998; 0.069 1.172 0.220 -72.385; 0.069 -0.215 1.039 2.693; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-17997.8, old_max_log_p =-17997.8 (thresh=-17979.8) 0.933 -0.055 -0.073 23.998; 0.069 1.172 0.220 -72.385; 0.069 -0.215 1.039 2.693; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-17245.9, old_max_log_p =-17997.8 (thresh=-17979.8) 0.981 -0.025 -0.033 9.122; 0.041 1.203 0.261 -74.094; 0.036 -0.246 1.000 17.415; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-17245.9, old_max_log_p =-17245.9 (thresh=-17228.7) 0.981 -0.025 -0.033 9.122; 0.041 1.203 0.261 -74.094; 0.036 -0.246 1.000 17.415; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-17021.4, old_max_log_p =-17245.9 (thresh=-17228.7) 0.971 -0.024 -0.016 7.312; 0.037 1.210 0.249 -74.198; 0.021 -0.229 0.996 16.242; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-16988.4, old_max_log_p =-17021.4 (thresh=-17004.3) 0.967 -0.014 -0.013 5.706; 0.029 1.210 0.253 -73.596; 0.021 -0.234 0.995 17.511; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-16987.5, old_max_log_p =-16988.4 (thresh=-16971.4) 0.963 -0.023 -0.015 8.232; 0.037 1.210 0.249 -74.207; 0.021 -0.229 0.996 16.246; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.96297 -0.02337 -0.01541 8.23172; 0.03674 1.21031 0.24928 -74.20750; 0.02064 -0.22933 0.99573 16.24642; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 0.96297 -0.02337 -0.01541 8.23172; 0.03674 1.21031 0.24928 -74.20750; 0.02064 -0.22933 0.99573 16.24642; 0.00000 0.00000 0.00000 1.00000; v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 outof QuasiNewtonEMA: 007: -log(p) = 16987.5 tol 0.000010 Resulting transform: 0.963 -0.023 -0.015 8.232; 0.037 1.210 0.249 -74.207; 0.021 -0.229 0.996 16.246; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -16987.5 (old=-24791.0) transform before final EM align: 0.963 -0.023 -0.015 8.232; 0.037 1.210 0.249 -74.207; 0.021 -0.229 0.996 16.246; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.96297 -0.02337 -0.01541 8.23172; 0.03674 1.21031 0.24928 -74.20750; 0.02064 -0.22933 0.99573 16.24642; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 0.96297 -0.02337 -0.01541 8.23172; 0.03674 1.21031 0.24928 -74.20750; 0.02064 -0.22933 0.99573 16.24642; 0.00000 0.00000 0.00000 1.00000; v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 outof QuasiNewtonEMA: 007: -log(p) = 2160587.5 tol 0.000000 final transform: 0.963 -0.023 -0.015 8.232; 0.037 1.210 0.249 -74.207; 0.021 -0.229 0.996 16.246; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull.lta... registration took 44 minutes and 0 seconds. \n mri_watershed -T1 -brain_atlas /Users/heatherreynolds/Applications/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz \n Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz If this is incorrect, please exit with CTL-C Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=128 y=135 z=112 r=74 first estimation of the main basin volume: 1742158 voxels Looking for seedpoints 2 found in the cerebellum 14 found in the rest of the brain global maximum in x=148, y=119, z=81, Imax=255 CSF=12, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done Analyze main basin size=-453203951 voxels, voxel volume =1.000 = 3841763345 mmm3 = 3841763.328 cm3 done PostAnalyze...Basin Prior 165 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=126,y=129, z=114, r=9858 iterations GLOBAL CSF_MIN=0, CSF_intensity=6, CSF_MAX=29 , nb = -1073730944 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=25 , nb = -1073751315 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=14 , nb = -1073751328 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=6, CSF_MAX=28 , nb = -1602740220 LEFT_BRAIN CSF_MIN=0, CSF_intensity=6, CSF_MAX=28 , nb = -1073743327 OTHER CSF_MIN=0, CSF_intensity=19, CSF_MAX=24 , nb = -1777685363 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 29, 27, 26, 66 after analyzing : 21, 27, 27, 36 RIGHT_CER before analyzing : 25, 30, 38, 72 after analyzing : 25, 35, 38, 44 LEFT_CER before analyzing : 14, 17, 28, 65 after analyzing : 14, 24, 28, 34 RIGHT_BRAIN before analyzing : 28, 50, 60, 70 after analyzing : 28, 56, 60, 59 LEFT_BRAIN before analyzing : 28, 27, 26, 57 after analyzing : 20, 27, 27, 34 OTHER before analyzing : 24, 25, 30, 45 after analyzing : 24, 28, 30, 32 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...68 iterations *********************VALIDATION********************* curvature mean = -0.013, std = 0.011 curvature mean = 69.093, std = 7.423 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 4.05, sigma = 5.87 after rotation: sse = 4.05, sigma = 5.87 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 4.77, its var is 6.08 before Erosion-Dilatation 1.87% of inacurate vertices after Erosion-Dilatation 2.05% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...43 iterations mri_strip_skull: done peeling brain Brain Size = 1622721 voxels, voxel volume = 1.000 mm3 = 1622721 mmm3 = 1622.721 cm3 ****************************** Saving brainmask.auto.mgz done \n cp brainmask.auto.mgz brainmask.mgz \n #------------------------------------- #@# EM Registration Thu Jul 15 12:35:44 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri \n mri_em_register -mask brainmask.mgz nu.mgz /Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta \n using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading '/Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca'... average std = 6.9 using min determinant for regularization = 4.7 0 singular and 1812 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 14.9 or > 790.2 total sample mean = 84.0 (478 zeros) ************************************************ spacing=8, using 2185 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2185, passno 0, spacing 8 resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=31.1 skull bounding box = (55, 80, 40) --> (198, 198, 201) using (103, 119, 121) as brain centroid... mean wm in atlas = 107, using box (85,105,101) --> (120, 133,140) to find MRI wm before smoothing, mri peak at 127 after smoothing, mri peak at 127, scaling input intensities by 0.843 scaling channel 0 by 0.84252 initial log_p = -79457.3 ************************************************ First Search limited to translation only. ************************************************ Found translation: (-1.1, -12.5, -10.2): log p = -39317.1 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-25194.6, old_max_log_p =-39317.1 (thresh=-39277.8) 0.935 0.011 -0.060 12.573; 0.000 1.170 0.242 -62.760; 0.069 -0.198 1.042 2.089; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-23246.3, old_max_log_p =-25194.6 (thresh=-25169.4) 0.935 0.011 -0.060 12.573; 0.000 1.234 0.255 -72.693; 0.065 -0.186 0.977 8.541; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-23185.4, old_max_log_p =-23246.3 (thresh=-23223.0) 0.994 0.012 -0.064 5.434; -0.005 1.321 0.202 -77.504; 0.065 -0.105 0.992 -3.780; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-23185.4, old_max_log_p =-23185.4 (thresh=-23162.2) 0.994 0.012 -0.064 5.434; -0.005 1.321 0.202 -77.504; 0.065 -0.105 0.992 -3.780; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-21309.2, old_max_log_p =-23185.4 (thresh=-23162.2) 0.964 0.029 -0.028 2.861; -0.021 1.319 0.219 -77.060; 0.034 -0.129 1.005 1.815; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-21149.4, old_max_log_p =-21309.2 (thresh=-21287.9) 0.979 0.011 -0.049 5.782; -0.003 1.293 0.248 -77.372; 0.050 -0.170 0.997 6.066; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 6 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-21111.2, old_max_log_p =-21149.4 (thresh=-21128.2) 0.964 0.030 -0.028 2.898; -0.021 1.277 0.212 -70.878; 0.034 -0.128 1.005 1.693; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 7 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-21111.2, old_max_log_p =-21111.2 (thresh=-21090.1) 0.964 0.030 -0.028 2.898; -0.021 1.277 0.212 -70.878; 0.034 -0.128 1.005 1.693; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 8 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-20438.3, old_max_log_p =-21111.2 (thresh=-21090.1) 0.968 0.025 -0.038 4.536; -0.017 1.269 0.202 -69.039; 0.041 -0.116 0.995 -0.102; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 9 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-20436.7, old_max_log_p =-20438.3 (thresh=-20417.8) 0.964 0.025 -0.033 4.116; -0.017 1.269 0.202 -69.039; 0.037 -0.116 0.999 -0.011; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2185 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.96389 0.02480 -0.03347 4.11620; -0.01688 1.26863 0.20230 -69.03869; 0.03718 -0.11627 0.99901 -0.01132; 0.00000 0.00000 0.00000 1.00000; nsamples 2185 Quasinewton: input matrix 0.96389 0.02480 -0.03347 4.11620; -0.01688 1.26863 0.20230 -69.03869; 0.03718 -0.11627 0.99901 -0.01132; 0.00000 0.00000 0.00000 1.00000; v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 outof QuasiNewtonEMA: 010: -log(p) = 20436.7 tol 0.000010 Resulting transform: 0.964 0.025 -0.033 4.116; -0.017 1.269 0.202 -69.039; 0.037 -0.116 0.999 -0.011; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -20436.7 (old=-79457.3) transform before final EM align: 0.964 0.025 -0.033 4.116; -0.017 1.269 0.202 -69.039; 0.037 -0.116 0.999 -0.011; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 244171 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.96389 0.02480 -0.03347 4.11620; -0.01688 1.26863 0.20230 -69.03869; 0.03718 -0.11627 0.99901 -0.01132; 0.00000 0.00000 0.00000 1.00000; nsamples 244171 Quasinewton: input matrix 0.96389 0.02480 -0.03347 4.11620; -0.01688 1.26863 0.20230 -69.03869; 0.03718 -0.11627 0.99901 -0.01132; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 009: -log(p) = 2693777.2 after pass:transform: ( 0.97, 0.03, -0.03, 4.12) ( -0.01, 1.27, 0.21, -69.04) ( 0.04, -0.12, 1.00, -0.01) v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 pass 2 through quasi-newton minimization... v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 outof QuasiNewtonEMA: 011: -log(p) = 2693777.2 tol 0.000000 final transform: 0.971 0.032 -0.026 4.116; -0.012 1.273 0.207 -69.039; 0.039 -0.115 1.002 -0.011; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach.lta... registration took 40 minutes and 37 seconds. #-------------------------------------- #@# CA Normalize Thu Jul 15 13:16:22 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri \n mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz \n writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volumes reading atlas from '/Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=30.0 skull bounding box = (54, 80, 40) --> (198, 198, 201) using (102, 119, 121) as brain centroid... mean wm in atlas = 107, using box (84,105,101) --> (119, 133,140) to find MRI wm before smoothing, mri peak at 127 after smoothing, mri peak at 127, scaling input intensities by 0.843 scaling channel 0 by 0.84252 using 244171 sample points... INFO: compute sample coordinates transform 0.971 0.032 -0.026 4.116; -0.012 1.273 0.207 -69.039; 0.039 -0.115 1.002 -0.011; 0.000 0.000 0.000 1.000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (119, 78, 38) --> (191, 167, 203) Left_Cerebral_White_Matter: limiting intensities to 135.0 --> 140.0 6 of 10 (60.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (58, 78, 39) --> (126, 166, 203) Right_Cerebral_White_Matter: limiting intensities to 133.0 --> 139.0 5 of 10 (50.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (124, 147, 62) --> (174, 183, 115) Left_Cerebellum_White_Matter: limiting intensities to 129.0 --> 141.0 1 of 6 (16.7%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (75, 147, 61) --> (123, 181, 117) Right_Cerebellum_White_Matter: limiting intensities to 126.0 --> 140.0 1 of 9 (11.1%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (107, 139, 97) --> (140, 194, 128) Brain_Stem: limiting intensities to 115.0 --> 126.0 2 of 9 (22.2%) samples deleted using 44 total control points for intensity normalization... bias field = 0.736 +- 0.093 0 of 29 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (119, 78, 38) --> (191, 167, 203) Left_Cerebral_White_Matter: limiting intensities to 98.0 --> 107.0 74 of 87 (85.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (58, 78, 39) --> (126, 166, 203) Right_Cerebral_White_Matter: limiting intensities to 99.0 --> 104.0 85 of 90 (94.4%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (124, 147, 62) --> (174, 183, 115) Left_Cerebellum_White_Matter: limiting intensities to 81.0 --> 98.0 5 of 32 (15.6%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (75, 147, 61) --> (123, 181, 117) Right_Cerebellum_White_Matter: limiting intensities to 91.0 --> 96.0 17 of 36 (47.2%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (107, 139, 97) --> (140, 194, 128) Brain_Stem: limiting intensities to 79.0 --> 91.0 8 of 22 (36.4%) samples deleted using 267 total control points for intensity normalization... bias field = 1.005 +- 0.068 0 of 78 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (119, 78, 38) --> (191, 167, 203) Left_Cerebral_White_Matter: limiting intensities to 70.0 --> 91.0 98 of 169 (58.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (58, 78, 39) --> (126, 166, 203) Right_Cerebral_White_Matter: limiting intensities to 101.0 --> 109.0 137 of 159 (86.2%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (124, 147, 62) --> (174, 183, 115) Left_Cerebellum_White_Matter: limiting intensities to 80.0 --> 98.0 14 of 67 (20.9%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (75, 147, 61) --> (123, 181, 117) Right_Cerebellum_White_Matter: limiting intensities to 83.0 --> 96.0 22 of 65 (33.8%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (107, 139, 97) --> (140, 194, 128) Brain_Stem: limiting intensities to 77.0 --> 94.0 11 of 36 (30.6%) samples deleted using 496 total control points for intensity normalization... bias field = 1.071 +- 0.137 0 of 214 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 2 minutes and 46 seconds. #-------------------------------------- #@# CA Reg Thu Jul 15 13:19:08 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri \n mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.m3z \n not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca'... freeing gibbs priors...done. average std[0] = 5.0 label assignment complete, 0 changed (0.00%) det(m_affine) = 1.26 (predicted orig area = 6.3) label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.04 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.964, neg=0, invalid=766 0001: dt=164.389662, rms=0.891 (7.589%), neg=0, invalid=766 0002: dt=377.024523, rms=0.836 (6.123%), neg=0, invalid=766 0003: dt=97.179724, rms=0.829 (0.903%), neg=0, invalid=766 0004: dt=369.920000, rms=0.823 (0.726%), neg=0, invalid=766 0005: dt=293.115987, rms=0.809 (1.674%), neg=0, invalid=766 0006: dt=56.574586, rms=0.808 (0.185%), neg=0, invalid=766 0007: dt=56.574586, rms=0.807 (0.038%), neg=0, invalid=766 0008: dt=56.574586, rms=0.807 (-0.012%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.807, neg=0, invalid=766 0009: dt=369.920000, rms=0.801 (0.737%), neg=0, invalid=766 0010: dt=295.936000, rms=0.796 (0.725%), neg=0, invalid=766 0011: dt=63.346939, rms=0.795 (0.101%), neg=0, invalid=766 0012: dt=63.346939, rms=0.795 (0.031%), neg=0, invalid=766 0013: dt=63.346939, rms=0.794 (0.020%), neg=0, invalid=766 0014: dt=63.346939, rms=0.794 (0.050%), neg=0, invalid=766 0015: dt=63.346939, rms=0.792 (0.241%), neg=0, invalid=766 0016: dt=63.346939, rms=0.789 (0.401%), neg=0, invalid=766 0017: dt=63.346939, rms=0.786 (0.393%), neg=0, invalid=766 0018: dt=63.346939, rms=0.783 (0.320%), neg=0, invalid=766 0019: dt=63.346939, rms=0.781 (0.263%), neg=0, invalid=766 0020: dt=63.346939, rms=0.780 (0.196%), neg=0, invalid=766 0021: dt=63.346939, rms=0.779 (0.141%), neg=0, invalid=766 0022: dt=63.346939, rms=0.777 (0.208%), neg=0, invalid=766 0023: dt=63.346939, rms=0.774 (0.368%), neg=0, invalid=766 0024: dt=63.346939, rms=0.771 (0.410%), neg=0, invalid=766 0025: dt=63.346939, rms=0.768 (0.358%), neg=0, invalid=766 0026: dt=63.346939, rms=0.766 (0.276%), neg=0, invalid=766 0027: dt=63.346939, rms=0.764 (0.221%), neg=0, invalid=766 0028: dt=63.346939, rms=0.763 (0.137%), neg=0, invalid=766 0029: dt=63.346939, rms=0.762 (0.127%), neg=0, invalid=766 0030: dt=63.346939, rms=0.761 (0.208%), neg=0, invalid=766 0031: dt=63.346939, rms=0.759 (0.280%), neg=0, invalid=766 0032: dt=63.346939, rms=0.756 (0.289%), neg=0, invalid=766 0033: dt=63.346939, rms=0.755 (0.241%), neg=0, invalid=766 0034: dt=63.346939, rms=0.753 (0.180%), neg=0, invalid=766 0035: dt=63.346939, rms=0.752 (0.132%), neg=0, invalid=766 0036: dt=63.346939, rms=0.751 (0.108%), neg=0, invalid=766 0037: dt=63.346939, rms=0.750 (0.136%), neg=0, invalid=766 0038: dt=63.346939, rms=0.749 (0.193%), neg=0, invalid=766 0039: dt=63.346939, rms=0.747 (0.228%), neg=0, invalid=766 0040: dt=63.346939, rms=0.746 (0.202%), neg=0, invalid=766 0041: dt=63.346939, rms=0.745 (0.155%), neg=0, invalid=766 0042: dt=63.346939, rms=0.744 (0.101%), neg=0, invalid=766 0043: dt=63.346939, rms=0.743 (0.073%), neg=0, invalid=766 0044: dt=2071.552000, rms=0.741 (0.322%), neg=0, invalid=766 0045: dt=0.000000, rms=0.741 (-0.006%), neg=0, invalid=766 0046: dt=0.850000, rms=0.741 (-0.000%), neg=0, invalid=766 setting smoothness coefficient to 0.15 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.747, neg=0, invalid=766 0047: dt=124.861407, rms=0.734 (1.817%), neg=0, invalid=766 0048: dt=158.639821, rms=0.713 (2.801%), neg=0, invalid=766 0049: dt=53.202454, rms=0.707 (0.885%), neg=0, invalid=766 0050: dt=62.208000, rms=0.704 (0.333%), neg=0, invalid=766 0051: dt=108.209476, rms=0.699 (0.726%), neg=0, invalid=766 0052: dt=46.355140, rms=0.696 (0.506%), neg=0, invalid=766 0053: dt=580.608000, rms=0.685 (1.565%), neg=0, invalid=766 0054: dt=66.159100, rms=0.677 (1.115%), neg=0, invalid=766 0055: dt=62.208000, rms=0.674 (0.503%), neg=0, invalid=766 0056: dt=15.719298, rms=0.673 (0.065%), neg=0, invalid=766 0057: dt=15.719298, rms=0.673 (0.002%), neg=0, invalid=766 0058: dt=15.719298, rms=0.673 (-0.008%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.673, neg=0, invalid=766 0059: dt=38.620690, rms=0.673 (0.105%), neg=0, invalid=766 0060: dt=119.095652, rms=0.671 (0.231%), neg=0, invalid=766 0061: dt=9.072000, rms=0.671 (0.009%), neg=0, invalid=766 0062: dt=9.072000, rms=0.671 (-0.002%), neg=0, invalid=766 setting smoothness coefficient to 0.59 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.697, neg=0, invalid=766 0063: dt=11.826087, rms=0.695 (0.221%), neg=0, invalid=766 0064: dt=12.615385, rms=0.694 (0.153%), neg=0, invalid=766 0065: dt=12.615385, rms=0.693 (0.145%), neg=0, invalid=766 0066: dt=12.615385, rms=0.692 (0.191%), neg=0, invalid=766 0067: dt=12.615385, rms=0.691 (0.122%), neg=0, invalid=766 0068: dt=12.615385, rms=0.690 (0.149%), neg=0, invalid=766 0069: dt=12.615385, rms=0.688 (0.362%), neg=0, invalid=766 0070: dt=12.615385, rms=0.685 (0.411%), neg=0, invalid=766 0071: dt=12.615385, rms=0.681 (0.565%), neg=0, invalid=766 0072: dt=12.615385, rms=0.678 (0.449%), neg=0, invalid=766 0073: dt=12.615385, rms=0.677 (0.179%), neg=0, invalid=766 0074: dt=12.615385, rms=0.677 (-0.035%), neg=0, invalid=766 0075: dt=0.000000, rms=0.677 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.677, neg=0, invalid=766 0076: dt=0.000000, rms=0.677 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 2.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.727, neg=0, invalid=766 0077: dt=0.000000, rms=0.727 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.727, neg=0, invalid=766 0078: dt=0.000000, rms=0.727 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 5.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.823, neg=0, invalid=766 0079: dt=0.586111, rms=0.816 (0.941%), neg=0, invalid=766 0080: dt=0.241935, rms=0.815 (0.052%), neg=0, invalid=766 0081: dt=0.241935, rms=0.815 (-0.014%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.815, neg=0, invalid=766 0082: dt=0.320000, rms=0.815 (0.072%), neg=0, invalid=766 0083: dt=0.096000, rms=0.815 (0.007%), neg=0, invalid=766 0084: dt=0.096000, rms=0.815 (-0.004%), neg=0, invalid=766 resetting metric properties... setting smoothness coefficient to 10.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.704, neg=0, invalid=766 0085: dt=0.448000, rms=0.683 (3.076%), neg=0, invalid=766 0086: dt=0.000000, rms=0.683 (0.001%), neg=0, invalid=766 0087: dt=0.050000, rms=0.683 (-0.518%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.683, neg=0, invalid=766 0088: dt=0.000000, rms=0.683 (0.000%), neg=0, invalid=766 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.11725 (24) mri peak = 0.16674 ( 6) Left_Lateral_Ventricle (4): linear fit = 0.22 x + 0.0 (5938 voxels, overlap=0.000) Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (5938 voxels, peak = 5), gca=9.6 gca peak = 0.14022 (22) mri peak = 0.13243 ( 5) Right_Lateral_Ventricle (43): linear fit = 0.28 x + 0.0 (4597 voxels, overlap=0.000) Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (4597 voxels, peak = 6), gca=8.8 gca peak = 0.24234 (100) mri peak = 0.03425 (113) Right_Pallidum (52): linear fit = 1.12 x + 0.0 (540 voxels, overlap=0.001) Right_Pallidum (52): linear fit = 1.12 x + 0.0 (540 voxels, peak = 112), gca=112.5 gca peak = 0.19192 (97) mri peak = 0.03577 (108) Left_Pallidum (13): linear fit = 1.10 x + 0.0 (544 voxels, overlap=0.310) Left_Pallidum (13): linear fit = 1.10 x + 0.0 (544 voxels, peak = 107), gca=106.7 gca peak = 0.24007 (63) mri peak = 0.04184 (57) Right_Hippocampus (53): linear fit = 0.93 x + 0.0 (1253 voxels, overlap=0.686) Right_Hippocampus (53): linear fit = 0.93 x + 0.0 (1253 voxels, peak = 58), gca=58.3 gca peak = 0.29892 (64) mri peak = 0.04142 (60) Left_Hippocampus (17): linear fit = 0.93 x + 0.0 (1075 voxels, overlap=0.387) Left_Hippocampus (17): linear fit = 0.93 x + 0.0 (1075 voxels, peak = 59), gca=59.2 gca peak = 0.12541 (104) mri peak = 0.03791 (101) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (53543 voxels, overlap=0.952) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (53543 voxels, peak = 104), gca=104.0 gca peak = 0.13686 (104) mri peak = 0.03802 (111) Left_Cerebral_White_Matter (2): linear fit = 1.08 x + 0.0 (70771 voxels, overlap=0.713) Left_Cerebral_White_Matter (2): linear fit = 1.08 x + 0.0 (70771 voxels, peak = 112), gca=111.8 gca peak = 0.11691 (63) mri peak = 0.02269 (67) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (56542 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (56542 voxels, peak = 65), gca=64.6 gca peak = 0.13270 (63) mri peak = 0.02217 (60) Right_Cerebral_Cortex (42): linear fit = 0.95 x + 0.0 (58417 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 0.95 x + 0.0 (58417 voxels, peak = 60), gca=59.8 gca peak = 0.15182 (70) mri peak = 0.04481 (76) Right_Caudate (50): linear fit = 1.05 x + 0.0 (1046 voxels, overlap=0.751) Right_Caudate (50): linear fit = 1.05 x + 0.0 (1046 voxels, peak = 74), gca=73.5 gca peak = 0.14251 (76) mri peak = 0.04887 (78) Left_Caudate (11): linear fit = 0.95 x + 0.0 (1322 voxels, overlap=0.715) Left_Caudate (11): linear fit = 0.95 x + 0.0 (1322 voxels, peak = 72), gca=72.2 gca peak = 0.12116 (60) mri peak = 0.03524 (57) Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (28583 voxels, overlap=0.983) Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (28583 voxels, peak = 62), gca=61.5 gca peak = 0.12723 (61) mri peak = 0.03686 (55) Right_Cerebellum_Cortex (47): linear fit = 0.95 x + 0.0 (31980 voxels, overlap=0.972) Right_Cerebellum_Cortex (47): linear fit = 0.95 x + 0.0 (31980 voxels, peak = 58), gca=58.0 gca peak = 0.22684 (88) mri peak = 0.05330 (104) Left_Cerebellum_White_Matter (7): linear fit = 1.17 x + 0.0 (9155 voxels, overlap=0.000) Left_Cerebellum_White_Matter (7): linear fit = 1.17 x + 0.0 (9155 voxels, peak = 103), gca=103.4 gca peak = 0.21067 (87) mri peak = 0.06224 (99) Right_Cerebellum_White_Matter (46): linear fit = 1.12 x + 0.0 (7574 voxels, overlap=0.045) Right_Cerebellum_White_Matter (46): linear fit = 1.12 x + 0.0 (7574 voxels, peak = 98), gca=97.9 gca peak = 0.25455 (62) mri peak = 0.08308 (65) Left_Amygdala (18): linear fit = 0.95 x + 0.0 (305 voxels, overlap=0.452) Left_Amygdala (18): linear fit = 0.95 x + 0.0 (305 voxels, peak = 59), gca=58.9 gca peak = 0.39668 (62) mri peak = 0.07492 (62) Right_Amygdala (54): linear fit = 1.02 x + 0.0 (409 voxels, overlap=0.762) Right_Amygdala (54): linear fit = 1.02 x + 0.0 (409 voxels, peak = 64), gca=63.5 gca peak = 0.10129 (93) mri peak = 0.03386 (97) Left_Thalamus_Proper (10): linear fit = 1.05 x + 0.0 (5391 voxels, overlap=0.714) Left_Thalamus_Proper (10): linear fit = 1.05 x + 0.0 (5391 voxels, peak = 98), gca=97.6 gca peak = 0.12071 (89) mri peak = 0.03103 (96) Right_Thalamus_Proper (49): linear fit = 1.05 x + 0.0 (4776 voxels, overlap=0.538) Right_Thalamus_Proper (49): linear fit = 1.05 x + 0.0 (4776 voxels, peak = 93), gca=93.4 gca peak = 0.13716 (82) mri peak = 0.04178 (90) Left_Putamen (12): linear fit = 1.12 x + 0.0 (2593 voxels, overlap=0.903) Left_Putamen (12): linear fit = 1.12 x + 0.0 (2593 voxels, peak = 92), gca=92.2 gca peak = 0.15214 (84) mri peak = 0.04009 (86) Right_Putamen (51): linear fit = 1.08 x + 0.0 (2364 voxels, overlap=0.735) Right_Putamen (51): linear fit = 1.08 x + 0.0 (2364 voxels, peak = 90), gca=90.3 gca peak = 0.08983 (85) mri peak = 0.04339 (96) Brain_Stem (16): linear fit = 1.15 x + 0.0 (13473 voxels, overlap=0.295) Brain_Stem (16): linear fit = 1.15 x + 0.0 (13473 voxels, peak = 98), gca=97.8 gca peak = 0.11809 (92) mri peak = 0.04305 (110) Right_VentralDC: unreasonable value (112.7/110.0), not in range [80, 110] - rejecting gca peak = 0.12914 (94) mri peak = 0.03940 (112) Left_VentralDC: unreasonable value (110.4/112.0), not in range [80, 110] - rejecting gca peak = 0.21100 (36) mri peak = 0.19534 ( 5) Third_Ventricle (14): linear fit = 0.12 x + 0.0 (221 voxels, overlap=0.000) Third_Ventricle (14): linear fit = 0.12 x + 0.0 (221 voxels, peak = 4), gca=4.5 gca peak = 0.13542 (27) mri peak = 0.08518 ( 5) Fourth_Ventricle (15): linear fit = 0.28 x + 0.0 (443 voxels, overlap=0.000) Fourth_Ventricle (15): linear fit = 0.28 x + 0.0 (443 voxels, peak = 7), gca=7.4 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.21802 (40) gca peak Third_Ventricle = 0.21100 (36) gca peak Fourth_Ventricle = 0.13542 (27) gca peak CSF = 0.17123 (45) gca peak Left_Accumbens_area = 0.25875 (69) gca peak Left_VentralDC = 0.12914 (94) gca peak Left_undetermined = 0.96240 (36) gca peak Left_vessel = 0.33262 (65) gca peak Left_choroid_plexus = 0.09846 (46) gca peak Right_Inf_Lat_Vent = 0.28113 (34) gca peak Right_Accumbens_area = 0.27120 (72) gca peak Right_VentralDC = 0.11809 (92) gca peak Right_vessel = 0.61915 (60) gca peak Right_choroid_plexus = 0.12775 (51) gca peak Fifth_Ventricle = 0.45329 (44) gca peak WM_hypointensities = 0.11729 (81) gca peak non_WM_hypointensities = 0.10912 (56) gca peak Optic_Chiasm = 0.33287 (75) not using caudate to estimate GM means estimating mean gm scale to be 0.97 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 0.40 x + 0.0 Left_Pallidum too bright - rescaling by 0.961 (from 1.100) to 102.5 (was 106.7) Right_Pallidum too bright - rescaling by 0.911 (from 1.125) to 102.5 (was 112.5) saving intensity scales to talairach.label_intensities.txt label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.01 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.700, neg=0, invalid=766 0089: dt=129.472000, rms=0.696 (0.629%), neg=0, invalid=766 0090: dt=295.936000, rms=0.691 (0.777%), neg=0, invalid=766 0091: dt=84.363636, rms=0.688 (0.394%), neg=0, invalid=766 0092: dt=8.092000, rms=0.688 (-0.001%), neg=0, invalid=766 0093: dt=8.092000, rms=0.688 (0.002%), neg=0, invalid=766 0094: dt=8.092000, rms=0.688 (-0.001%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.688, neg=0, invalid=766 0095: dt=93.957447, rms=0.686 (0.239%), neg=0, invalid=766 0096: dt=295.936000, rms=0.682 (0.614%), neg=0, invalid=766 0097: dt=27.744000, rms=0.681 (0.078%), neg=0, invalid=766 0098: dt=8.092000, rms=0.681 (0.003%), neg=0, invalid=766 0099: dt=8.092000, rms=0.681 (0.004%), neg=0, invalid=766 0100: dt=8.092000, rms=0.681 (-0.003%), neg=0, invalid=766 setting smoothness coefficient to 0.03 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.681, neg=0, invalid=766 0101: dt=97.717514, rms=0.668 (2.029%), neg=0, invalid=766 0102: dt=62.208000, rms=0.655 (1.830%), neg=0, invalid=766 0103: dt=26.522523, rms=0.653 (0.394%), neg=0, invalid=766 0104: dt=145.152000, rms=0.644 (1.365%), neg=0, invalid=766 0105: dt=28.316547, rms=0.642 (0.258%), neg=0, invalid=766 0106: dt=36.288000, rms=0.640 (0.312%), neg=0, invalid=766 0107: dt=9.072000, rms=0.640 (0.041%), neg=0, invalid=766 0108: dt=4.536000, rms=0.640 (0.027%), neg=0, invalid=766 0109: dt=0.035437, rms=0.640 (0.005%), neg=0, invalid=766 0110: dt=0.000554, rms=0.640 (0.000%), neg=0, invalid=766 0111: dt=0.000000, rms=0.640 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.640, neg=0, invalid=766 0112: dt=145.928339, rms=0.634 (0.957%), neg=0, invalid=766 0113: dt=47.847619, rms=0.630 (0.576%), neg=0, invalid=766 0114: dt=17.777778, rms=0.630 (0.079%), neg=0, invalid=766 0115: dt=67.200000, rms=0.629 (0.148%), neg=0, invalid=766 0116: dt=2.268000, rms=0.628 (0.024%), neg=0, invalid=766 0117: dt=0.283500, rms=0.628 (0.003%), neg=0, invalid=766 0118: dt=0.141750, rms=0.628 (0.001%), neg=0, invalid=766 0119: dt=0.035437, rms=0.628 (0.000%), neg=0, invalid=766 0120: dt=0.004860, rms=0.628 (-0.000%), neg=0, invalid=766 setting smoothness coefficient to 0.12 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.630, neg=0, invalid=766 0121: dt=0.000000, rms=0.630 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.630, neg=0, invalid=766 0122: dt=32.000000, rms=0.611 (2.964%), neg=0, invalid=766 0123: dt=0.175000, rms=0.611 (0.009%), neg=0, invalid=766 0124: dt=0.043750, rms=0.611 (0.003%), neg=0, invalid=766 0125: dt=0.021875, rms=0.611 (0.002%), neg=0, invalid=766 0126: dt=0.002734, rms=0.611 (0.000%), neg=0, invalid=766 0127: dt=0.000000, rms=0.611 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 0.40 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.615, neg=0, invalid=766 0128: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.615, neg=0, invalid=766 0129: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 1.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.625, neg=0, invalid=766 0130: dt=0.448000, rms=0.620 (0.687%), neg=0, invalid=766 0131: dt=0.448000, rms=0.617 (0.590%), neg=0, invalid=766 0132: dt=0.112000, rms=0.616 (0.126%), neg=0, invalid=766 0133: dt=0.448000, rms=0.613 (0.486%), neg=0, invalid=766 0134: dt=1.792000, rms=0.603 (1.617%), neg=0, invalid=766 0135: dt=0.448000, rms=0.602 (0.180%), neg=0, invalid=766 0136: dt=0.448000, rms=0.601 (0.159%), neg=0, invalid=766 0137: dt=0.448000, rms=0.600 (0.141%), neg=0, invalid=766 0138: dt=1.536000, rms=0.598 (0.402%), neg=0, invalid=766 0139: dt=0.112000, rms=0.598 (0.019%), neg=0, invalid=766 0140: dt=0.112000, rms=0.598 (0.016%), neg=0, invalid=766 0141: dt=0.112000, rms=0.597 (0.030%), neg=0, invalid=766 0142: dt=0.112000, rms=0.597 (0.040%), neg=0, invalid=766 0143: dt=0.112000, rms=0.597 (0.046%), neg=0, invalid=766 0144: dt=0.112000, rms=0.597 (0.054%), neg=0, invalid=766 0145: dt=0.112000, rms=0.596 (0.056%), neg=0, invalid=766 0146: dt=0.112000, rms=0.596 (0.058%), neg=0, invalid=766 0147: dt=0.112000, rms=0.596 (0.054%), neg=0, invalid=766 0148: dt=0.112000, rms=0.595 (0.052%), neg=0, invalid=766 0149: dt=0.112000, rms=0.595 (0.043%), neg=0, invalid=766 0150: dt=0.112000, rms=0.595 (0.040%), neg=0, invalid=766 0151: dt=0.112000, rms=0.595 (0.031%), neg=0, invalid=766 0152: dt=0.112000, rms=0.594 (0.021%), neg=0, invalid=766 0153: dt=0.112000, rms=0.594 (0.012%), neg=0, invalid=766 0154: dt=0.000000, rms=0.594 (-0.003%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.594, neg=0, invalid=766 0155: dt=1.792000, rms=0.593 (0.264%), neg=0, invalid=766 0156: dt=0.448000, rms=0.593 (0.037%), neg=0, invalid=766 0157: dt=0.448000, rms=0.592 (0.034%), neg=0, invalid=766 0158: dt=0.448000, rms=0.592 (0.034%), neg=0, invalid=766 0159: dt=0.448000, rms=0.592 (0.058%), neg=0, invalid=766 0160: dt=0.448000, rms=0.591 (0.069%), neg=0, invalid=766 0161: dt=0.448000, rms=0.591 (0.016%), neg=0, invalid=766 0162: dt=0.448000, rms=0.591 (0.012%), neg=0, invalid=766 0163: dt=0.448000, rms=0.591 (0.017%), neg=0, invalid=766 0164: dt=1.280000, rms=0.591 (0.043%), neg=0, invalid=766 0165: dt=0.448000, rms=0.591 (0.011%), neg=0, invalid=766 0166: dt=0.448000, rms=0.591 (0.008%), neg=0, invalid=766 0167: dt=0.448000, rms=0.591 (0.021%), neg=0, invalid=766 0168: dt=0.448000, rms=0.590 (0.025%), neg=0, invalid=766 0169: dt=0.448000, rms=0.590 (0.029%), neg=0, invalid=766 0170: dt=0.448000, rms=0.590 (0.029%), neg=0, invalid=766 0171: dt=0.448000, rms=0.590 (0.027%), neg=0, invalid=766 0172: dt=0.448000, rms=0.590 (0.024%), neg=0, invalid=766 0173: dt=0.448000, rms=0.590 (0.016%), neg=0, invalid=766 0174: dt=0.000000, rms=0.590 (-0.002%), neg=0, invalid=766 resetting metric properties... setting smoothness coefficient to 2.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.579, neg=0, invalid=766 0175: dt=0.112000, rms=0.574 (0.972%), neg=0, invalid=766 0176: dt=0.155317, rms=0.567 (1.070%), neg=0, invalid=766 0177: dt=0.028000, rms=0.567 (0.142%), neg=0, invalid=766 0178: dt=0.028000, rms=0.566 (0.136%), neg=0, invalid=766 0179: dt=0.130725, rms=0.562 (0.600%), neg=0, invalid=766 0180: dt=0.028000, rms=0.562 (0.103%), neg=0, invalid=766 0181: dt=0.028000, rms=0.561 (0.097%), neg=0, invalid=766 0182: dt=0.096000, rms=0.560 (0.321%), neg=0, invalid=766 0183: dt=0.028000, rms=0.559 (0.079%), neg=0, invalid=766 0184: dt=0.028000, rms=0.559 (0.077%), neg=0, invalid=766 0185: dt=0.080000, rms=0.557 (0.213%), neg=0, invalid=766 0186: dt=0.020000, rms=0.557 (0.048%), neg=0, invalid=766 0187: dt=0.020000, rms=0.557 (0.047%), neg=0, invalid=766 0188: dt=0.020000, rms=0.557 (0.044%), neg=0, invalid=766 0189: dt=0.020000, rms=0.556 (0.085%), neg=0, invalid=766 0190: dt=0.020000, rms=0.556 (0.117%), neg=0, invalid=766 0191: dt=0.020000, rms=0.555 (0.143%), neg=0, invalid=766 0192: dt=0.020000, rms=0.554 (0.164%), neg=0, invalid=766 0193: dt=0.020000, rms=0.553 (0.177%), neg=0, invalid=766 0194: dt=0.020000, rms=0.552 (0.186%), neg=0, invalid=766 0195: dt=0.020000, rms=0.551 (0.187%), neg=0, invalid=766 0196: dt=0.020000, rms=0.550 (0.187%), neg=0, invalid=766 0197: dt=0.020000, rms=0.549 (0.179%), neg=0, invalid=766 0198: dt=0.020000, rms=0.548 (0.170%), neg=0, invalid=766 0199: dt=0.020000, rms=0.547 (0.158%), neg=0, invalid=766 0200: dt=0.020000, rms=0.547 (0.004%), neg=0, invalid=766 0201: dt=0.020000, rms=0.547 (0.008%), neg=0, invalid=766 0202: dt=0.020000, rms=0.547 (0.012%), neg=0, invalid=766 0203: dt=0.020000, rms=0.547 (0.015%), neg=0, invalid=766 0204: dt=0.020000, rms=0.547 (0.019%), neg=0, invalid=766 0205: dt=0.020000, rms=0.547 (0.021%), neg=0, invalid=766 0206: dt=0.020000, rms=0.547 (0.005%), neg=0, invalid=766 0207: dt=0.028000, rms=0.547 (0.009%), neg=0, invalid=766 0208: dt=0.096000, rms=0.546 (0.032%), neg=0, invalid=766 0209: dt=0.028000, rms=0.546 (0.010%), neg=0, invalid=766 0210: dt=0.028000, rms=0.546 (0.008%), neg=0, invalid=766 0211: dt=0.028000, rms=0.546 (0.017%), neg=0, invalid=766 0212: dt=0.028000, rms=0.546 (0.026%), neg=0, invalid=766 0213: dt=0.003500, rms=0.546 (0.001%), neg=0, invalid=766 0214: dt=0.003500, rms=0.546 (0.002%), neg=0, invalid=766 0215: dt=0.003500, rms=0.546 (0.002%), neg=0, invalid=766 0216: dt=0.028000, rms=0.546 (0.009%), neg=0, invalid=766 0217: dt=0.028000, rms=0.546 (0.010%), neg=0, invalid=766 0218: dt=0.028000, rms=0.546 (0.008%), neg=0, invalid=766 0219: dt=0.028000, rms=0.546 (0.010%), neg=0, invalid=766 0220: dt=0.028000, rms=0.546 (0.016%), neg=0, invalid=766 0221: dt=0.007000, rms=0.546 (0.003%), neg=0, invalid=766 0222: dt=0.007000, rms=0.546 (0.003%), neg=0, invalid=766 0223: dt=0.007000, rms=0.546 (0.006%), neg=0, invalid=766 0224: dt=0.007000, rms=0.546 (0.007%), neg=0, invalid=766 0225: dt=0.007000, rms=0.546 (0.008%), neg=0, invalid=766 0226: dt=0.007000, rms=0.546 (0.002%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.546, neg=0, invalid=766 0227: dt=0.028000, rms=0.545 (0.094%), neg=0, invalid=766 0228: dt=0.028000, rms=0.545 (0.087%), neg=0, invalid=766 0229: dt=0.028000, rms=0.544 (0.083%), neg=0, invalid=766 0230: dt=0.024000, rms=0.544 (0.064%), neg=0, invalid=766 0231: dt=0.024000, rms=0.543 (0.063%), neg=0, invalid=766 0232: dt=0.028000, rms=0.543 (0.069%), neg=0, invalid=766 0233: dt=0.024000, rms=0.543 (0.055%), neg=0, invalid=766 0234: dt=0.007000, rms=0.543 (0.015%), neg=0, invalid=766 0235: dt=0.007000, rms=0.543 (0.015%), neg=0, invalid=766 0236: dt=0.007000, rms=0.542 (0.028%), neg=0, invalid=766 0237: dt=0.007000, rms=0.542 (0.039%), neg=0, invalid=766 0238: dt=0.007000, rms=0.542 (0.052%), neg=0, invalid=766 0239: dt=0.007000, rms=0.542 (0.056%), neg=0, invalid=766 0240: dt=0.007000, rms=0.541 (0.063%), neg=0, invalid=766 0241: dt=0.007000, rms=0.541 (0.067%), neg=0, invalid=766 0242: dt=0.007000, rms=0.541 (0.070%), neg=0, invalid=766 0243: dt=0.007000, rms=0.540 (0.072%), neg=0, invalid=766 0244: dt=0.007000, rms=0.540 (0.073%), neg=0, invalid=766 0245: dt=0.007000, rms=0.539 (0.072%), neg=0, invalid=766 0246: dt=0.007000, rms=0.539 (0.070%), neg=0, invalid=766 0247: dt=0.007000, rms=0.539 (0.066%), neg=0, invalid=766 0248: dt=0.007000, rms=0.538 (0.064%), neg=0, invalid=766 0249: dt=0.007000, rms=0.538 (0.059%), neg=0, invalid=766 0250: dt=0.007000, rms=0.538 (0.055%), neg=0, invalid=766 0251: dt=0.007000, rms=0.537 (0.051%), neg=0, invalid=766 0252: dt=0.007000, rms=0.537 (0.046%), neg=0, invalid=766 0253: dt=0.007000, rms=0.537 (0.041%), neg=0, invalid=766 0254: dt=0.007000, rms=0.537 (0.036%), neg=0, invalid=766 0255: dt=0.007000, rms=0.537 (0.031%), neg=0, invalid=766 0256: dt=0.007000, rms=0.536 (0.027%), neg=0, invalid=766 0257: dt=0.007000, rms=0.536 (0.022%), neg=0, invalid=766 0258: dt=0.007000, rms=0.536 (0.018%), neg=0, invalid=766 0259: dt=0.000000, rms=0.536 (0.001%), neg=0, invalid=766 0260: dt=0.025000, rms=0.536 (-0.007%), neg=0, invalid=766 label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.01 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.534, neg=0, invalid=766 0261: dt=0.000000, rms=0.535 (-0.170%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.535, neg=0, invalid=766 0262: dt=110.976000, rms=0.534 (0.075%), neg=0, invalid=766 0263: dt=32.368000, rms=0.534 (0.018%), neg=0, invalid=766 0264: dt=32.368000, rms=0.534 (0.011%), neg=0, invalid=766 0265: dt=32.368000, rms=0.534 (0.018%), neg=0, invalid=766 0266: dt=32.368000, rms=0.534 (0.023%), neg=0, invalid=766 0267: dt=32.368000, rms=0.534 (0.026%), neg=0, invalid=766 0268: dt=32.368000, rms=0.534 (0.026%), neg=0, invalid=766 0269: dt=32.368000, rms=0.533 (0.024%), neg=0, invalid=766 0270: dt=32.368000, rms=0.533 (0.022%), neg=0, invalid=766 0271: dt=517.888000, rms=0.533 (0.055%), neg=0, invalid=766 0272: dt=55.488000, rms=0.533 (0.030%), neg=0, invalid=766 0273: dt=55.488000, rms=0.533 (0.001%), neg=0, invalid=766 0274: dt=55.488000, rms=0.533 (0.005%), neg=0, invalid=766 0275: dt=55.488000, rms=0.533 (0.018%), neg=0, invalid=766 0276: dt=55.488000, rms=0.533 (0.018%), neg=0, invalid=766 0277: dt=55.488000, rms=0.533 (0.018%), neg=0, invalid=766 0278: dt=55.488000, rms=0.532 (0.016%), neg=0, invalid=766 0279: dt=295.936000, rms=0.532 (0.022%), neg=0, invalid=766 0280: dt=27.744000, rms=0.532 (0.010%), neg=0, invalid=766 setting smoothness coefficient to 0.03 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.532, neg=0, invalid=766 0281: dt=9.072000, rms=0.532 (0.044%), neg=0, invalid=766 0282: dt=0.567000, rms=0.532 (0.002%), neg=0, invalid=766 0283: dt=0.283500, rms=0.532 (0.001%), neg=0, invalid=766 0284: dt=0.070875, rms=0.532 (0.000%), neg=0, invalid=766 0285: dt=0.035437, rms=0.532 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.532, neg=0, invalid=766 0286: dt=0.105903, rms=0.532 (0.001%), neg=0, invalid=766 0287: dt=0.004860, rms=0.532 (0.000%), neg=0, invalid=766 0288: dt=0.000038, rms=0.532 (-0.000%), neg=0, invalid=766 setting smoothness coefficient to 0.12 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.532, neg=0, invalid=766 0289: dt=0.000000, rms=0.532 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.532, neg=0, invalid=766 0290: dt=0.000000, rms=0.532 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 0.40 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.533, neg=0, invalid=766 0291: dt=0.252000, rms=0.532 (0.147%), neg=0, invalid=766 0292: dt=0.216000, rms=0.531 (0.122%), neg=0, invalid=766 0293: dt=1.008000, rms=0.528 (0.546%), neg=0, invalid=766 0294: dt=0.063000, rms=0.528 (0.030%), neg=0, invalid=766 0295: dt=0.031500, rms=0.528 (0.015%), neg=0, invalid=766 0296: dt=0.007875, rms=0.528 (0.004%), neg=0, invalid=766 0297: dt=0.003938, rms=0.528 (0.002%), neg=0, invalid=766 0298: dt=0.003375, rms=0.528 (0.002%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.528, neg=0, invalid=766 0299: dt=0.000984, rms=0.528 (0.000%), neg=0, invalid=766 0300: dt=0.000246, rms=0.528 (0.000%), neg=0, invalid=766 0301: dt=0.000062, rms=0.528 (0.000%), neg=0, invalid=766 0302: dt=0.000031, rms=0.528 (0.000%), neg=0, invalid=766 0303: dt=0.000015, rms=0.528 (0.000%), neg=0, invalid=766 setting smoothness coefficient to 1.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.529, neg=0, invalid=766 0304: dt=0.096000, rms=0.529 (0.077%), neg=0, invalid=766 0305: dt=0.112000, rms=0.528 (0.093%), neg=0, invalid=766 0306: dt=0.448000, rms=0.526 (0.354%), neg=0, invalid=766 0307: dt=0.087924, rms=0.526 (0.056%), neg=0, invalid=766 0308: dt=0.320000, rms=0.525 (0.210%), neg=0, invalid=766 0309: dt=0.112000, rms=0.525 (0.062%), neg=0, invalid=766 0310: dt=0.448000, rms=0.523 (0.256%), neg=0, invalid=766 0311: dt=0.112000, rms=0.523 (0.050%), neg=0, invalid=766 0312: dt=0.320000, rms=0.522 (0.149%), neg=0, invalid=766 0313: dt=0.112000, rms=0.522 (0.043%), neg=0, invalid=766 0314: dt=0.112000, rms=0.522 (0.046%), neg=0, invalid=766 0315: dt=0.112000, rms=0.521 (0.085%), neg=0, invalid=766 0316: dt=0.112000, rms=0.521 (0.113%), neg=0, invalid=766 0317: dt=0.112000, rms=0.520 (0.136%), neg=0, invalid=766 0318: dt=0.112000, rms=0.520 (0.032%), neg=0, invalid=766 0319: dt=0.112000, rms=0.520 (0.059%), neg=0, invalid=766 0320: dt=0.112000, rms=0.519 (0.080%), neg=0, invalid=766 0321: dt=0.112000, rms=0.519 (0.094%), neg=0, invalid=766 0322: dt=0.112000, rms=0.518 (0.106%), neg=0, invalid=766 0323: dt=0.112000, rms=0.518 (0.113%), neg=0, invalid=766 0324: dt=0.112000, rms=0.517 (0.116%), neg=0, invalid=766 0325: dt=0.112000, rms=0.516 (0.115%), neg=0, invalid=766 0326: dt=0.112000, rms=0.516 (0.109%), neg=0, invalid=766 0327: dt=0.112000, rms=0.515 (0.099%), neg=0, invalid=766 0328: dt=0.112000, rms=0.515 (0.085%), neg=0, invalid=766 0329: dt=0.112000, rms=0.514 (0.075%), neg=0, invalid=766 0330: dt=0.112000, rms=0.514 (0.062%), neg=0, invalid=766 0331: dt=0.112000, rms=0.514 (0.048%), neg=0, invalid=766 0332: dt=0.112000, rms=0.514 (0.036%), neg=0, invalid=766 0333: dt=0.112000, rms=0.514 (0.021%), neg=0, invalid=766 0334: dt=0.112000, rms=0.514 (0.009%), neg=0, invalid=766 0335: dt=0.000000, rms=0.514 (0.000%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.514, neg=0, invalid=766 0336: dt=0.112000, rms=0.513 (0.026%), neg=0, invalid=766 0337: dt=0.112000, rms=0.513 (0.026%), neg=0, invalid=766 0338: dt=0.112000, rms=0.513 (0.024%), neg=0, invalid=766 0339: dt=0.112000, rms=0.513 (0.044%), neg=0, invalid=766 0340: dt=0.112000, rms=0.513 (0.057%), neg=0, invalid=766 0341: dt=0.112000, rms=0.512 (0.066%), neg=0, invalid=766 0342: dt=0.112000, rms=0.512 (0.069%), neg=0, invalid=766 0343: dt=0.112000, rms=0.512 (0.066%), neg=0, invalid=766 0344: dt=0.112000, rms=0.511 (0.061%), neg=0, invalid=766 0345: dt=0.112000, rms=0.511 (0.053%), neg=0, invalid=766 0346: dt=0.112000, rms=0.511 (0.007%), neg=0, invalid=766 0347: dt=0.112000, rms=0.511 (0.016%), neg=0, invalid=766 0348: dt=0.112000, rms=0.511 (0.023%), neg=0, invalid=766 0349: dt=0.112000, rms=0.511 (0.007%), neg=0, invalid=766 0350: dt=0.448000, rms=0.511 (0.034%), neg=0, invalid=766 0351: dt=0.112000, rms=0.511 (0.004%), neg=0, invalid=766 0352: dt=0.112000, rms=0.511 (0.008%), neg=0, invalid=766 0353: dt=0.112000, rms=0.510 (0.015%), neg=0, invalid=766 0354: dt=0.112000, rms=0.510 (0.020%), neg=0, invalid=766 0355: dt=0.112000, rms=0.510 (0.023%), neg=0, invalid=766 0356: dt=0.112000, rms=0.510 (0.026%), neg=0, invalid=766 0357: dt=0.112000, rms=0.510 (0.029%), neg=0, invalid=766 0358: dt=0.112000, rms=0.510 (0.032%), neg=0, invalid=766 0359: dt=0.112000, rms=0.510 (0.033%), neg=0, invalid=766 0360: dt=0.112000, rms=0.509 (0.035%), neg=0, invalid=766 0361: dt=0.112000, rms=0.509 (0.036%), neg=0, invalid=766 0362: dt=0.112000, rms=0.509 (0.036%), neg=0, invalid=766 0363: dt=0.112000, rms=0.509 (0.036%), neg=0, invalid=766 0364: dt=0.112000, rms=0.509 (0.035%), neg=0, invalid=766 0365: dt=0.112000, rms=0.509 (0.033%), neg=0, invalid=766 0366: dt=0.112000, rms=0.508 (0.032%), neg=0, invalid=766 0367: dt=0.112000, rms=0.508 (0.032%), neg=0, invalid=766 0368: dt=0.112000, rms=0.508 (0.032%), neg=0, invalid=766 0369: dt=0.112000, rms=0.508 (0.031%), neg=0, invalid=766 0370: dt=0.112000, rms=0.508 (0.031%), neg=0, invalid=766 0371: dt=0.112000, rms=0.508 (0.031%), neg=0, invalid=766 0372: dt=0.112000, rms=0.508 (0.002%), neg=0, invalid=766 0373: dt=0.112000, rms=0.508 (0.003%), neg=0, invalid=766 0374: dt=0.112000, rms=0.508 (0.004%), neg=0, invalid=766 0375: dt=0.112000, rms=0.508 (0.005%), neg=0, invalid=766 0376: dt=0.112000, rms=0.507 (0.007%), neg=0, invalid=766 0377: dt=0.112000, rms=0.507 (0.009%), neg=0, invalid=766 0378: dt=0.112000, rms=0.507 (0.010%), neg=0, invalid=766 0379: dt=0.112000, rms=0.507 (0.011%), neg=0, invalid=766 0380: dt=0.112000, rms=0.507 (0.011%), neg=0, invalid=766 0381: dt=0.112000, rms=0.507 (0.011%), neg=0, invalid=766 0382: dt=0.112000, rms=0.507 (0.012%), neg=0, invalid=766 0383: dt=0.112000, rms=0.507 (0.013%), neg=0, invalid=766 0384: dt=0.112000, rms=0.507 (0.013%), neg=0, invalid=766 0385: dt=0.112000, rms=0.507 (0.013%), neg=0, invalid=766 0386: dt=0.448000, rms=0.507 (0.006%), neg=0, invalid=766 0387: dt=0.112000, rms=0.507 (-0.001%), neg=0, invalid=766 resetting metric properties... setting smoothness coefficient to 2.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.503, neg=0, invalid=766 0388: dt=0.028000, rms=0.502 (0.209%), neg=0, invalid=766 0389: dt=0.028000, rms=0.501 (0.197%), neg=0, invalid=766 0390: dt=0.005000, rms=0.501 (0.033%), neg=0, invalid=766 0391: dt=0.005000, rms=0.500 (0.033%), neg=0, invalid=766 0392: dt=0.005000, rms=0.500 (0.062%), neg=0, invalid=766 0393: dt=0.005000, rms=0.500 (0.088%), neg=0, invalid=766 0394: dt=0.005000, rms=0.499 (0.110%), neg=0, invalid=766 0395: dt=0.005000, rms=0.498 (0.128%), neg=0, invalid=766 0396: dt=0.005000, rms=0.498 (0.028%), neg=0, invalid=766 0397: dt=0.005000, rms=0.498 (0.054%), neg=0, invalid=766 0398: dt=0.005000, rms=0.498 (0.076%), neg=0, invalid=766 0399: dt=0.005000, rms=0.497 (0.095%), neg=0, invalid=766 0400: dt=0.005000, rms=0.497 (0.112%), neg=0, invalid=766 0401: dt=0.005000, rms=0.496 (0.125%), neg=0, invalid=766 0402: dt=0.005000, rms=0.495 (0.136%), neg=0, invalid=766 0403: dt=0.005000, rms=0.495 (0.144%), neg=0, invalid=766 0404: dt=0.005000, rms=0.495 (0.021%), neg=0, invalid=766 0405: dt=0.005000, rms=0.494 (0.039%), neg=0, invalid=766 0406: dt=0.005000, rms=0.494 (0.056%), neg=0, invalid=766 0407: dt=0.005000, rms=0.494 (0.070%), neg=0, invalid=766 0408: dt=0.005000, rms=0.493 (0.082%), neg=0, invalid=766 0409: dt=0.005000, rms=0.493 (0.092%), neg=0, invalid=766 0410: dt=0.005000, rms=0.493 (0.018%), neg=0, invalid=766 0411: dt=0.005000, rms=0.493 (0.033%), neg=0, invalid=766 0412: dt=0.005000, rms=0.492 (0.047%), neg=0, invalid=766 0413: dt=0.005000, rms=0.492 (0.059%), neg=0, invalid=766 0414: dt=0.005000, rms=0.492 (0.069%), neg=0, invalid=766 0415: dt=0.005000, rms=0.491 (0.077%), neg=0, invalid=766 0416: dt=0.005000, rms=0.491 (0.015%), neg=0, invalid=766 0417: dt=0.005000, rms=0.491 (0.028%), neg=0, invalid=766 0418: dt=0.005000, rms=0.491 (0.039%), neg=0, invalid=766 0419: dt=0.005000, rms=0.491 (0.050%), neg=0, invalid=766 0420: dt=0.005000, rms=0.490 (0.058%), neg=0, invalid=766 0421: dt=0.005000, rms=0.490 (0.065%), neg=0, invalid=766 0422: dt=0.005000, rms=0.490 (0.071%), neg=0, invalid=766 0423: dt=0.005000, rms=0.490 (0.012%), neg=0, invalid=766 0424: dt=0.005000, rms=0.490 (0.023%), neg=0, invalid=766 0425: dt=0.005000, rms=0.489 (0.032%), neg=0, invalid=766 0426: dt=0.005000, rms=0.489 (0.040%), neg=0, invalid=766 0427: dt=0.005000, rms=0.489 (0.047%), neg=0, invalid=766 0428: dt=0.005000, rms=0.489 (0.053%), neg=0, invalid=766 0429: dt=0.005000, rms=0.488 (0.057%), neg=0, invalid=766 0430: dt=0.005000, rms=0.488 (0.061%), neg=0, invalid=766 0431: dt=0.005000, rms=0.488 (0.064%), neg=0, invalid=766 0432: dt=0.005000, rms=0.488 (0.066%), neg=0, invalid=766 0433: dt=0.005000, rms=0.487 (0.068%), neg=0, invalid=766 0434: dt=0.005000, rms=0.487 (0.068%), neg=0, invalid=766 0435: dt=0.005000, rms=0.487 (0.068%), neg=0, invalid=766 0436: dt=0.005000, rms=0.487 (0.007%), neg=0, invalid=766 0437: dt=0.005000, rms=0.486 (0.012%), neg=0, invalid=766 0438: dt=0.005000, rms=0.486 (0.006%), neg=0, invalid=766 0439: dt=0.028000, rms=0.486 (0.036%), neg=0, invalid=766 0440: dt=0.005000, rms=0.486 (0.006%), neg=0, invalid=766 0441: dt=0.005000, rms=0.486 (0.006%), neg=0, invalid=766 0442: dt=0.005000, rms=0.486 (0.011%), neg=0, invalid=766 0443: dt=0.005000, rms=0.486 (0.016%), neg=0, invalid=766 0444: dt=0.005000, rms=0.486 (0.020%), neg=0, invalid=766 0445: dt=0.005000, rms=0.486 (0.024%), neg=0, invalid=766 0446: dt=0.005000, rms=0.486 (0.027%), neg=0, invalid=766 0447: dt=0.005000, rms=0.486 (0.005%), neg=0, invalid=766 0448: dt=0.005000, rms=0.486 (0.010%), neg=0, invalid=766 0449: dt=0.005000, rms=0.486 (0.014%), neg=0, invalid=766 0450: dt=0.005000, rms=0.486 (0.005%), neg=0, invalid=766 0451: dt=0.007000, rms=0.486 (0.007%), neg=0, invalid=766 0452: dt=0.020000, rms=0.485 (0.020%), neg=0, invalid=766 0453: dt=0.007000, rms=0.485 (0.007%), neg=0, invalid=766 0454: dt=0.007000, rms=0.485 (0.007%), neg=0, invalid=766 0455: dt=0.007000, rms=0.485 (0.007%), neg=0, invalid=766 0456: dt=0.007000, rms=0.485 (0.013%), neg=0, invalid=766 0457: dt=0.007000, rms=0.485 (0.018%), neg=0, invalid=766 0458: dt=0.007000, rms=0.485 (0.006%), neg=0, invalid=766 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.485, neg=0, invalid=766 0459: dt=0.007000, rms=0.485 (0.026%), neg=0, invalid=766 0460: dt=0.001750, rms=0.485 (0.007%), neg=0, invalid=766 0461: dt=0.001750, rms=0.485 (0.007%), neg=0, invalid=766 0462: dt=0.001750, rms=0.485 (0.012%), neg=0, invalid=766 0463: dt=0.001750, rms=0.485 (0.018%), neg=0, invalid=766 0464: dt=0.001750, rms=0.485 (0.022%), neg=0, invalid=766 0465: dt=0.001750, rms=0.485 (0.026%), neg=0, invalid=766 0466: dt=0.001750, rms=0.484 (0.030%), neg=0, invalid=766 0467: dt=0.001750, rms=0.484 (0.033%), neg=0, invalid=766 0468: dt=0.001750, rms=0.484 (0.035%), neg=0, invalid=766 0469: dt=0.001750, rms=0.484 (0.037%), neg=0, invalid=766 0470: dt=0.001750, rms=0.484 (0.039%), neg=0, invalid=766 0471: dt=0.001750, rms=0.484 (0.041%), neg=0, invalid=766 0472: dt=0.001750, rms=0.483 (0.042%), neg=0, invalid=766 0473: dt=0.001750, rms=0.483 (0.043%), neg=0, invalid=766 0474: dt=0.001750, rms=0.483 (0.043%), neg=0, invalid=766 0475: dt=0.001750, rms=0.483 (0.044%), neg=0, invalid=766 0476: dt=0.001750, rms=0.482 (0.044%), neg=0, invalid=766 0477: dt=0.001750, rms=0.482 (0.044%), neg=0, invalid=766 0478: dt=0.001750, rms=0.482 (0.044%), neg=0, invalid=766 0479: dt=0.001750, rms=0.482 (0.043%), neg=0, invalid=766 0480: dt=0.001750, rms=0.482 (0.043%), neg=0, invalid=766 0481: dt=0.001750, rms=0.481 (0.042%), neg=0, invalid=766 0482: dt=0.001750, rms=0.481 (0.042%), neg=0, invalid=766 0483: dt=0.001750, rms=0.481 (0.041%), neg=0, invalid=766 0484: dt=0.001750, rms=0.481 (0.040%), neg=0, invalid=766 0485: dt=0.001750, rms=0.481 (0.039%), neg=0, invalid=766 0486: dt=0.001750, rms=0.480 (0.038%), neg=0, invalid=766 0487: dt=0.001750, rms=0.480 (0.037%), neg=0, invalid=766 0488: dt=0.001750, rms=0.480 (0.036%), neg=0, invalid=766 0489: dt=0.001750, rms=0.480 (0.003%), neg=0, invalid=766 0490: dt=0.001750, rms=0.480 (0.005%), neg=0, invalid=766 0491: dt=0.001750, rms=0.480 (0.007%), neg=0, invalid=766 0492: dt=0.001750, rms=0.480 (0.009%), neg=0, invalid=766 0493: dt=0.001750, rms=0.480 (0.011%), neg=0, invalid=766 0494: dt=0.001750, rms=0.480 (0.012%), neg=0, invalid=766 0495: dt=0.001750, rms=0.480 (0.013%), neg=0, invalid=766 0496: dt=0.001750, rms=0.480 (0.015%), neg=0, invalid=766 0497: dt=0.001750, rms=0.480 (0.016%), neg=0, invalid=766 0498: dt=0.001750, rms=0.480 (0.016%), neg=0, invalid=766 0499: dt=0.001750, rms=0.480 (0.017%), neg=0, invalid=766 0500: dt=0.001750, rms=0.479 (0.017%), neg=0, invalid=766 0501: dt=0.001750, rms=0.479 (0.018%), neg=0, invalid=766 0502: dt=0.001750, rms=0.479 (0.018%), neg=0, invalid=766 0503: dt=0.001750, rms=0.479 (0.018%), neg=0, invalid=766 0504: dt=0.001750, rms=0.479 (0.019%), neg=0, invalid=766 0505: dt=0.001750, rms=0.479 (0.019%), neg=0, invalid=766 0506: dt=0.001750, rms=0.479 (0.019%), neg=0, invalid=766 0507: dt=0.007000, rms=0.479 (0.007%), neg=0, invalid=766 0508: dt=0.001750, rms=0.479 (0.002%), neg=0, invalid=766 0509: dt=0.001750, rms=0.479 (0.003%), neg=0, invalid=766 0510: dt=0.001750, rms=0.479 (0.005%), neg=0, invalid=766 0511: dt=0.001750, rms=0.479 (0.006%), neg=0, invalid=766 0512: dt=0.001750, rms=0.479 (0.007%), neg=0, invalid=766 0513: dt=0.001750, rms=0.479 (0.008%), neg=0, invalid=766 0514: dt=0.001750, rms=0.479 (0.009%), neg=0, invalid=766 0515: dt=0.001750, rms=0.479 (0.010%), neg=0, invalid=766 0516: dt=0.001750, rms=0.479 (0.010%), neg=0, invalid=766 0517: dt=0.001750, rms=0.479 (0.011%), neg=0, invalid=766 0518: dt=0.001750, rms=0.478 (0.011%), neg=0, invalid=766 0519: dt=0.001750, rms=0.478 (0.012%), neg=0, invalid=766 0520: dt=0.001750, rms=0.478 (0.012%), neg=0, invalid=766 0521: dt=0.001750, rms=0.478 (0.012%), neg=0, invalid=766 0522: dt=0.001750, rms=0.478 (0.013%), neg=0, invalid=766 0523: dt=0.001750, rms=0.478 (0.013%), neg=0, invalid=766 0524: dt=0.001750, rms=0.478 (0.013%), neg=0, invalid=766 0525: dt=0.001750, rms=0.478 (0.013%), neg=0, invalid=766 0526: dt=0.001750, rms=0.478 (0.013%), neg=0, invalid=766 writing output transformation to transforms/talairach.m3z... registration took 3 hours, 14 minutes and 40 seconds. #-------------------------------------- #@# CA Reg Inv Thu Jul 15 16:33:48 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI31/mri \n mri_ca_register -invert-and-save transforms/talairach.m3z \n Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z gunzip -c transforms/talairach.m3z Inverting GCAM Saving inverse #-------------------------------------- #@# Remove Neck Thu Jul 15 16:35:25 BST 2010 \n mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca nu_noneck.mgz \n erasing everything more than 25 mm from possible brain reading atlas '/Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca'... reading input volume 'nu.mgz'... reading transform 'transforms/talairach.m3z'... gunzip -c transforms/talairach.m3z removing structures at least 25 mm from brain... 11397066 nonbrain voxels erased writing output to nu_noneck.mgz... nonbrain removal took 1 minutes and 54 seconds. #-------------------------------------- #@# SkullLTA Thu Jul 15 16:37:19 BST 2010 \n mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /Users/heatherreynolds/Applications/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta \n aligning to atlas containing skull, setting unknown_nbr_spacing = 5 using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach_with_skull.log reading '/Users/heatherreynolds/Applications/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu_noneck.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=14.0 skull bounding box = (36, 57, 24) --> (212, 204, 227) using (95, 106, 126) as brain centroid... mean wm in atlas = 126, using box (73,88,101) --> (116, 124,151) to find MRI wm before smoothing, mri peak at 119 after smoothing, mri peak at 118, scaling input intensities by 1.068 scaling channel 0 by 1.0678 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-18027.5, old_max_log_p =-16968.7 (thresh=-16951.8) 0.906 0.032 -0.087 19.214; -0.014 1.278 0.141 -61.696; 0.108 -0.031 1.072 -27.796; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-17470.2, old_max_log_p =-18027.5 (thresh=-18009.4) 0.954 -0.021 -0.024 10.931; 0.022 1.249 0.241 -77.599; 0.045 -0.151 1.008 1.470; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-17421.9, old_max_log_p =-17470.2 (thresh=-17452.7) 0.940 -0.002 -0.004 7.847; 0.005 1.232 0.221 -69.005; 0.030 -0.132 1.027 -1.529; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-17421.9, old_max_log_p =-17421.9 (thresh=-17404.5) 0.940 -0.002 -0.004 7.847; 0.005 1.232 0.221 -69.005; 0.030 -0.132 1.027 -1.529; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-17270.4, old_max_log_p =-17421.9 (thresh=-17404.5) 0.951 -0.006 -0.014 7.663; 0.010 1.214 0.239 -70.323; 0.037 -0.157 1.019 1.362; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-17233.3, old_max_log_p =-17270.4 (thresh=-17253.1) 0.955 -0.006 -0.014 7.202; 0.010 1.219 0.240 -71.071; 0.037 -0.157 1.019 1.362; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-17233.3, old_max_log_p =-17233.3 (thresh=-17216.0) 0.955 -0.006 -0.014 7.202; 0.010 1.219 0.240 -71.071; 0.037 -0.157 1.019 1.362; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.95464 -0.00611 -0.01371 7.20216; 0.00968 1.21892 0.24021 -71.07121; 0.03741 -0.15675 1.01863 1.36188; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 0.95464 -0.00611 -0.01371 7.20216; 0.00968 1.21892 0.24021 -71.07121; 0.03741 -0.15675 1.01863 1.36188; 0.00000 0.00000 0.00000 1.00000; v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 outof QuasiNewtonEMA: 007: -log(p) = 17233.3 tol 0.000010 Resulting transform: 0.955 -0.006 -0.014 7.202; 0.010 1.219 0.240 -71.071; 0.037 -0.157 1.019 1.362; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -17233.3 (old=-16968.7) transform before final EM align: 0.955 -0.006 -0.014 7.202; 0.010 1.219 0.240 -71.071; 0.037 -0.157 1.019 1.362; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.95464 -0.00611 -0.01371 7.20216; 0.00968 1.21892 0.24021 -71.07121; 0.03741 -0.15675 1.01863 1.36188; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 0.95464 -0.00611 -0.01371 7.20216; 0.00968 1.21892 0.24021 -71.07121; 0.03741 -0.15675 1.01863 1.36188; 0.00000 0.00000 0.00000 1.00000; v3p/netlib/opt/lbfgs.c: lb3_1.lp > 0 outof QuasiNewtonEMA: 007: -log(p) = 2166954.5 tol 0.000000 final transform: 0.955 -0.006 -0.014 7.202; 0.010 1.219 0.240 -71.071; 0.037 -0.157 1.019 1.362; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull.lta... registration took 44 minutes and 24 seconds. #-------------------------------------- #@# SubCort Seg Thu Jul 15 17:21:43 BST 2010 \n mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z /Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz \n renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 not handling expanded ventricles... reading 1 input volumes... reading classifier array from /Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca... reading input volume from norm.mgz... average std[0] = 6.9 reading transform from transforms/talairach.m3z... gunzip -c transforms/talairach.m3z Atlas used for the 3D morph was /Users/heatherreynolds/Applications/freesurfer/average/RB_all_2008-03-26.gca average std = 6.9 using min determinant for regularization = 4.7 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15151 (27) mri peak = 0.17257 ( 6) Left_Lateral_Ventricle (4): linear fit = 0.22 x + 0.0 (8221 voxels, overlap=0.000) Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (8221 voxels, peak = 6), gca=10.8 gca peak = 0.14982 (20) mri peak = 0.14366 ( 5) Right_Lateral_Ventricle (43): linear fit = 0.30 x + 0.0 (6429 voxels, overlap=0.000) Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (6429 voxels, peak = 6), gca=8.0 gca peak = 0.28003 (97) mri peak = 0.03793 (113) Right_Pallidum (52): linear fit = 1.12 x + 0.0 (615 voxels, overlap=0.000) Right_Pallidum (52): linear fit = 1.12 x + 0.0 (615 voxels, peak = 109), gca=109.1 gca peak = 0.18160 (96) mri peak = 0.03013 (81) Left_Pallidum (13): linear fit = 1.10 x + 0.0 (609 voxels, overlap=0.080) Left_Pallidum (13): linear fit = 1.10 x + 0.0 (609 voxels, peak = 106), gca=105.6 gca peak = 0.27536 (62) mri peak = 0.04168 (57) Right_Hippocampus (53): linear fit = 0.93 x + 0.0 (1323 voxels, overlap=0.246) Right_Hippocampus (53): linear fit = 0.93 x + 0.0 (1323 voxels, peak = 57), gca=57.4 gca peak = 0.32745 (63) mri peak = 0.04878 (60) Left_Hippocampus (17): linear fit = 0.88 x + 0.0 (1073 voxels, overlap=0.486) Left_Hippocampus (17): linear fit = 0.88 x + 0.0 (1073 voxels, peak = 55), gca=55.1 gca peak = 0.08597 (105) mri peak = 0.04116 (101) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (42084 voxels, overlap=0.832) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (42084 voxels, peak = 105), gca=105.0 gca peak = 0.09209 (106) mri peak = 0.04030 (111) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (47459 voxels, overlap=0.709) Left_Cerebral_White_Matter (2): linear fit = 1.05 x + 0.0 (47459 voxels, peak = 111), gca=111.3 gca peak = 0.07826 (63) mri peak = 0.02312 (67) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (61929 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (61929 voxels, peak = 65), gca=64.6 gca peak = 0.08598 (64) mri peak = 0.02346 (61) Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (62916 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (62916 voxels, peak = 66), gca=65.6 gca peak = 0.24164 (71) mri peak = 0.05710 (76) Right_Caudate (50): linear fit = 1.08 x + 0.0 (1110 voxels, overlap=1.000) Right_Caudate (50): linear fit = 1.08 x + 0.0 (1110 voxels, peak = 76), gca=76.3 gca peak = 0.18227 (75) mri peak = 0.04954 (85) Left_Caudate (11): linear fit = 1.02 x + 0.0 (1311 voxels, overlap=0.914) Left_Caudate (11): linear fit = 1.02 x + 0.0 (1311 voxels, peak = 77), gca=76.9 gca peak = 0.10629 (62) mri peak = 0.03624 (61) Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (27495 voxels, overlap=0.988) Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (27495 voxels, peak = 64), gca=63.5 gca peak = 0.11668 (59) mri peak = 0.03833 (60) Right_Cerebellum_Cortex (47): linear fit = 0.95 x + 0.0 (30547 voxels, overlap=0.959) Right_Cerebellum_Cortex (47): linear fit = 0.95 x + 0.0 (30547 voxels, peak = 56), gca=56.0 gca peak = 0.17849 (88) mri peak = 0.06711 (104) Left_Cerebellum_White_Matter (7): linear fit = 1.17 x + 0.0 (6551 voxels, overlap=0.000) Left_Cerebellum_White_Matter (7): linear fit = 1.17 x + 0.0 (6551 voxels, peak = 103), gca=103.4 gca peak = 0.16819 (86) mri peak = 0.06841 (98) Right_Cerebellum_White_Matter (46): linear fit = 1.12 x + 0.0 (6596 voxels, overlap=0.169) Right_Cerebellum_White_Matter (46): linear fit = 1.12 x + 0.0 (6596 voxels, peak = 97), gca=96.8 gca peak = 0.41688 (64) mri peak = 0.05771 (65) Left_Amygdala (18): linear fit = 1.10 x + 0.0 (314 voxels, overlap=0.629) Left_Amygdala (18): linear fit = 1.10 x + 0.0 (314 voxels, peak = 70), gca=70.4 gca peak = 0.42394 (62) mri peak = 0.06823 (62) Right_Amygdala (54): linear fit = 0.98 x + 0.0 (403 voxels, overlap=0.570) Right_Amygdala (54): linear fit = 0.98 x + 0.0 (403 voxels, peak = 60), gca=60.5 gca peak = 0.10041 (96) mri peak = 0.03872 (97) Left_Thalamus_Proper (10): linear fit = 1.05 x + 0.0 (4454 voxels, overlap=0.774) Left_Thalamus_Proper (10): linear fit = 1.05 x + 0.0 (4454 voxels, peak = 101), gca=100.8 gca peak = 0.13978 (88) mri peak = 0.04011 (96) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (4194 voxels, overlap=0.733) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (4194 voxels, peak = 95), gca=94.6 gca peak = 0.08514 (81) mri peak = 0.04599 (90) Left_Putamen (12): linear fit = 1.08 x + 0.0 (2420 voxels, overlap=0.740) Left_Putamen (12): linear fit = 1.08 x + 0.0 (2420 voxels, peak = 87), gca=87.1 gca peak = 0.09624 (82) mri peak = 0.04176 (83) Right_Putamen (51): linear fit = 1.05 x + 0.0 (2030 voxels, overlap=0.911) Right_Putamen (51): linear fit = 1.05 x + 0.0 (2030 voxels, peak = 86), gca=86.1 gca peak = 0.07543 (88) mri peak = 0.04453 (96) Brain_Stem (16): linear fit = 1.15 x + 0.0 (12203 voxels, overlap=0.309) Brain_Stem (16): linear fit = 1.15 x + 0.0 (12203 voxels, peak = 101), gca=101.2 gca peak = 0.12757 (95) mri peak = 0.04619 (107) Right_VentralDC: unreasonable value (111.6/107.0), not in range [80, 110] - rejecting gca peak = 0.17004 (92) mri peak = 0.04452 (112) Left_VentralDC: unreasonable value (110.4/112.0), not in range [80, 110] - rejecting gca peak = 0.21361 (36) mri peak = 0.19352 ( 5) Third_Ventricle (14): linear fit = 0.12 x + 0.0 (444 voxels, overlap=0.000) Third_Ventricle (14): linear fit = 0.12 x + 0.0 (444 voxels, peak = 4), gca=4.5 gca peak = 0.26069 (23) mri peak = 0.15756 ( 7) Fourth_Ventricle (15): linear fit = 0.17 x + 0.0 (215 voxels, overlap=0.000) Fourth_Ventricle (15): linear fit = 0.17 x + 0.0 (215 voxels, peak = 4), gca=4.0 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.31795 (35) gca peak Third_Ventricle = 0.21361 (36) gca peak Fourth_Ventricle = 0.26069 (23) gca peak CSF = 0.14367 (38) gca peak Left_Accumbens_area = 0.57033 (70) gca peak Left_VentralDC = 0.17004 (92) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.65201 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.31129 (32) gca peak Right_Accumbens_area = 0.30219 (72) gca peak Right_VentralDC = 0.12757 (95) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.72939 (42) gca peak WM_hypointensities = 0.14821 (82) gca peak non_WM_hypointensities = 0.10354 (53) gca peak Optic_Chiasm = 0.34849 (76) not using caudate to estimate GM means estimating mean gm scale to be 0.99 x + 0.0 estimating mean wm scale to be 1.02 x + 0.0 estimating mean csf scale to be 0.40 x + 0.0 Left_Pallidum too bright - rescaling by 0.973 (from 1.100) to 102.7 (was 105.6) Right_Pallidum too bright - rescaling by 0.942 (from 1.125) to 102.7 (was 109.1) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.31600 (11) mri peak = 0.17257 ( 6) Left_Lateral_Ventricle (4): linear fit = 0.52 x + 0.0 (8221 voxels, overlap=0.414) Left_Lateral_Ventricle (4): linear fit = 0.52 x + 0.0 (8221 voxels, peak = 6), gca=5.8 gca peak = 0.29325 ( 9) mri peak = 0.14366 ( 5) Right_Lateral_Ventricle (43): linear fit = 0.77 x + 0.0 (6429 voxels, overlap=0.804) Right_Lateral_Ventricle (43): linear fit = 0.77 x + 0.0 (6429 voxels, peak = 7), gca=7.0 gca peak = 0.26648 (104) mri peak = 0.03793 (113) Right_Pallidum (52): linear fit = 1.08 x + 0.0 (615 voxels, overlap=0.000) Right_Pallidum (52): linear fit = 1.08 x + 0.0 (615 voxels, peak = 112), gca=111.8 gca peak = 0.18206 (103) mri peak = 0.03013 (81) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (609 voxels, overlap=0.238) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (609 voxels, peak = 103), gca=103.0 gca peak = 0.29376 (57) mri peak = 0.04168 (57) Right_Hippocampus (53): linear fit = 0.98 x + 0.0 (1323 voxels, overlap=0.763) Right_Hippocampus (53): linear fit = 0.98 x + 0.0 (1323 voxels, peak = 56), gca=55.6 gca peak = 0.32541 (55) mri peak = 0.04878 (60) Left_Hippocampus (17): linear fit = 1.08 x + 0.0 (1073 voxels, overlap=0.719) Left_Hippocampus (17): linear fit = 1.08 x + 0.0 (1073 voxels, peak = 59), gca=59.1 gca peak = 0.08599 (105) mri peak = 0.04116 (101) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (42084 voxels, overlap=0.832) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (42084 voxels, peak = 105), gca=105.0 gca peak = 0.08771 (111) mri peak = 0.04030 (111) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (47459 voxels, overlap=0.817) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (47459 voxels, peak = 111), gca=111.0 gca peak = 0.07469 (65) mri peak = 0.02312 (67) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (61929 voxels, overlap=0.000) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (61929 voxels, peak = 67), gca=66.6 gca peak = 0.08730 (65) mri peak = 0.02346 (61) Right_Cerebral_Cortex (42): linear fit = 0.95 x + 0.0 (62916 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 0.95 x + 0.0 (62916 voxels, peak = 62), gca=61.8 gca peak = 0.27822 (79) mri peak = 0.05710 (76) Right_Caudate (50): linear fit = 1.00 x + 0.0 (1110 voxels, overlap=1.000) Right_Caudate (50): linear fit = 1.00 x + 0.0 (1110 voxels, peak = 79), gca=79.0 gca peak = 0.18158 (77) mri peak = 0.04954 (85) Left_Caudate (11): linear fit = 1.00 x + 0.0 (1311 voxels, overlap=0.902) Left_Caudate (11): linear fit = 1.00 x + 0.0 (1311 voxels, peak = 77), gca=77.0 gca peak = 0.10213 (63) mri peak = 0.03624 (61) Left_Cerebellum_Cortex (8): linear fit = 0.95 x + 0.0 (27495 voxels, overlap=0.976) Left_Cerebellum_Cortex (8): linear fit = 0.95 x + 0.0 (27495 voxels, peak = 60), gca=59.8 gca peak = 0.12305 (57) mri peak = 0.03833 (60) Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (30547 voxels, overlap=0.991) Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (30547 voxels, peak = 58), gca=58.4 gca peak = 0.15686 (104) mri peak = 0.06711 (104) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (6551 voxels, overlap=0.988) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (6551 voxels, peak = 104), gca=104.0 gca peak = 0.15522 (97) mri peak = 0.06841 (98) Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (6596 voxels, overlap=0.995) Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (6596 voxels, peak = 99), gca=99.4 gca peak = 0.30055 (70) mri peak = 0.05771 (65) Left_Amygdala (18): linear fit = 0.98 x + 0.0 (314 voxels, overlap=0.911) Left_Amygdala (18): linear fit = 0.98 x + 0.0 (314 voxels, peak = 68), gca=68.2 gca peak = 0.37533 (61) mri peak = 0.06823 (62) Right_Amygdala (54): linear fit = 1.02 x + 0.0 (403 voxels, overlap=0.543) Right_Amygdala (54): linear fit = 1.02 x + 0.0 (403 voxels, peak = 63), gca=62.5 gca peak = 0.10270 (99) mri peak = 0.03872 (97) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4454 voxels, overlap=0.936) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4454 voxels, peak = 99), gca=99.0 gca peak = 0.09802 (94) mri peak = 0.04011 (96) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (4194 voxels, overlap=0.987) Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (4194 voxels, peak = 94), gca=94.0 gca peak = 0.08397 (87) mri peak = 0.04599 (90) Left_Putamen (12): linear fit = 1.00 x + 0.0 (2420 voxels, overlap=0.978) Left_Putamen (12): linear fit = 1.00 x + 0.0 (2420 voxels, peak = 87), gca=87.0 gca peak = 0.10204 (80) mri peak = 0.04176 (83) Right_Putamen (51): linear fit = 1.00 x + 0.0 (2030 voxels, overlap=0.997) Right_Putamen (51): linear fit = 1.00 x + 0.0 (2030 voxels, peak = 80), gca=80.0 gca peak = 0.06961 (98) mri peak = 0.04453 (96) Brain_Stem (16): linear fit = 1.00 x + 0.0 (12203 voxels, overlap=0.786) Brain_Stem (16): linear fit = 1.00 x + 0.0 (12203 voxels, peak = 98), gca=98.0 gca peak = 0.11372 (91) mri peak = 0.04619 (107) Right_VentralDC (60): linear fit = 1.15 x + 0.0 (1367 voxels, overlap=0.134) Right_VentralDC (60): linear fit = 1.15 x + 0.0 (1367 voxels, peak = 105), gca=104.7 gca peak = 0.15905 (92) mri peak = 0.04452 (112) Left_VentralDC: unreasonable value (108.1/112.0), not in range [80, 110] - rejecting gca peak = 0.35640 (14) mri peak = 0.19352 ( 5) Third_Ventricle (14): linear fit = 0.28 x + 0.0 (444 voxels, overlap=0.356) Third_Ventricle (14): linear fit = 0.28 x + 0.0 (444 voxels, peak = 4), gca=3.9 gca peak = 0.33827 ( 9) mri peak = 0.15756 ( 7) Fourth_Ventricle (15): linear fit = 0.70 x + 0.0 (215 voxels, overlap=0.894) Fourth_Ventricle (15): linear fit = 0.70 x + 0.0 (215 voxels, peak = 6), gca=6.3 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.27467 (31) gca peak Third_Ventricle = 0.35640 (14) gca peak CSF = 0.30128 (18) gca peak Left_Accumbens_area = 0.37763 (71) gca peak Left_VentralDC = 0.15905 (92) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.46367 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.24679 (29) gca peak Right_Accumbens_area = 0.43827 (77) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.45329 (19) gca peak WM_hypointensities = 0.14725 (84) gca peak non_WM_hypointensities = 0.11940 (54) gca peak Optic_Chiasm = 0.34849 (76) mri_ca_label GCA sequential renormalization: label 28 not consistently computed. not using caudate to estimate GM means setting label Right_VentralDC based on Left_VentralDC = 1.15 x + 0 estimating mean gm scale to be 1.00 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 0.67 x + 0.0 Left_Pallidum too bright - rescaling by 0.996 (from 1.000) to 102.6 (was 103.0) Right_Pallidum too bright - rescaling by 0.918 (from 1.075) to 102.6 (was 111.8) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt Cannot allocate memory Darwin geoff-imac.smb.man.ac.uk 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 recon-all exited with ERRORS at Thu Jul 15 17:41:45 BST 2010 geoff-imac:~ heatherreynolds$