Last login: Fri Jul 16 13:57:11 on ttys004 -------- freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Users/heatherreynolds/Applications/freesurfer FSFAST_HOME /Users/heatherreynolds/Applications/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /Users/heatherreynolds/Applications/freesurfer/subjects MNI_DIR /Users/heatherreynolds/Applications/freesurfer/mni FSL_DIR /usr/local/fsl geoff-imac:~ heatherreynolds$ recon-all -subject MCI32 -i /Users/heatherreynolds/Desktop/MCI/h00032_T1MR_R.hdr -all Subject Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0 Current Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0 INFO: SUBJECTS_DIR is /Users/heatherreynolds/Applications/freesurfer/subjects Actual FREESURFER_HOME /Users/heatherreynolds/Applications/freesurfer Darwin geoff-imac.smb.man.ac.uk 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32 \n mri_convert /Users/heatherreynolds/Desktop/MCI/h00032_T1MR_R.hdr /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig/001.mgz \n mri_convert /Users/heatherreynolds/Desktop/MCI/h00032_T1MR_R.hdr /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig/001.mgz $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from /Users/heatherreynolds/Desktop/MCI/h00032_T1MR_R.hdr... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Mon Jul 19 14:41:02 BST 2010 Found 1 runs /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig/001.mgz WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. \n cp /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig/001.mgz /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/rawavg.mgz \n /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32 \n mri_convert /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/rawavg.mgz /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig.mgz --conform \n mri_convert /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/rawavg.mgz /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig.mgz --conform $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) Original Data has (1, 1, 1) mm size and (256, 256, 150) voxels. Data is conformed to 1 mm size and 256 voxels for all directions changing data type from 3 to 0 (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig.mgz... \n mri_add_xform_to_header -c /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/transforms/talairach.xfm /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig.mgz /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/orig.mgz \n INFO: extension is mgz #-------------------------------------------- #@# Nu Intensity Correction Mon Jul 19 14:41:15 BST 2010 \n mri_nu_correct.mni --i orig.mgz --o nu.mgz --n 2 \n /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri /Users/heatherreynolds/Applications/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.7.2.2 2009/05/04 16:16:27 nicks Exp $ Darwin geoff-imac.smb.man.ac.uk 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 Mon Jul 19 14:41:15 BST 2010 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nschmans@W0084482 (i686-apple-darwin8.8.1) on 2006-10-03 at 21:43:56 tmpdir is ./tmp.mri_nu_correct.mni.90699 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.90699/nu0.mnc mri_convert orig.mgz ./tmp.mri_nu_correct.mni.90699/nu0.mnc $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from orig.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to ./tmp.mri_nu_correct.mni.90699/nu0.mnc... -------------------------------------------------------- Iteration 1 Mon Jul 19 14:41:20 BST 2010 nu_correct -clobber ./tmp.mri_nu_correct.mni.90699/nu0.mnc ./tmp.mri_nu_correct.mni.90699/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.90699/0/ [heatherreynolds@geoff-imac.smb.man.ac.uk:/Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/] [2010-07-19 14:41:20] running: /Users/heatherreynolds/Applications/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.90699/0/ ./tmp.mri_nu_correct.mni.90699/nu0.mnc ./tmp.mri_nu_correct.mni.90699/nu1.imp Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Number of iterations: 27 CV of field change: 0.000973924 [heatherreynolds@geoff-imac.smb.man.ac.uk:/Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/] [2010-07-19 14:41:35] running: /Users/heatherreynolds/Applications/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.90699/nu0.mnc ./tmp.mri_nu_correct.mni.90699/0//template.mnc Transforming slices:......................................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Transforming slices:................................................................................................................................................................................................................................................................Done -------------------------------------------------------- Iteration 2 Mon Jul 19 14:41:38 BST 2010 nu_correct -clobber ./tmp.mri_nu_correct.mni.90699/nu1.mnc ./tmp.mri_nu_correct.mni.90699/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.90699/1/ [heatherreynolds@geoff-imac.smb.man.ac.uk:/Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/] [2010-07-19 14:41:38] running: /Users/heatherreynolds/Applications/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.90699/1/ ./tmp.mri_nu_correct.mni.90699/nu1.mnc ./tmp.mri_nu_correct.mni.90699/nu2.imp Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Number of iterations: 2 CV of field change: 0.000771772 [heatherreynolds@geoff-imac.smb.man.ac.uk:/Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/] [2010-07-19 14:41:39] running: /Users/heatherreynolds/Applications/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.90699/nu1.mnc ./tmp.mri_nu_correct.mni.90699/1//template.mnc Transforming slices:......................................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Transforming slices:................................................................................................................................................................................................................................................................Done mri_convert ./tmp.mri_nu_correct.mni.90699/nu2.mnc nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.90699/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from ./tmp.mri_nu_correct.mni.90699/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... Mon Jul 19 14:41:48 BST 2010 mri_nu_correct.mni done #-------------------------------------------- #@# Talairach Mon Jul 19 14:41:48 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri \n talairach_avi --i nu.mgz --xfm transforms/talairach.auto.xfm \n /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri /Users/heatherreynolds/Applications/freesurfer/bin/talairach_avi --i nu.mgz --xfm transforms/talairach.auto.xfm $Id: talairach_avi,v 1.4.2.1 2009/07/30 19:22:07 nicks Exp $ Darwin geoff-imac.smb.man.ac.uk 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 Mon Jul 19 14:41:48 BST 2010 -------------------------------------------- mri_convert nu.mgz talsrcimg.img $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from nu.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to talsrcimg.img... Analyze Output Matrix -1.000 0.000 0.000 129.000; 0.000 0.000 1.000 -156.000; 0.000 -1.000 0.000 146.000; 0.000 0.000 0.000 1.000; -------------------- INFO: set hdr.hist.orient to -1 -------------------------------------------- mpr2mni305 talsrcimg Mon Jul 19 14:41:51 BST 2010 /Users/heatherreynolds/Applications/freesurfer/bin/mpr2mni305 talsrcimg $Id: mpr2mni305,v 1.3.2.1 2009/07/30 19:21:45 nicks Exp $ target=711-2C_as_mni_average_305 --------------------------------------------------------------------- analyzeto4dfp talsrcimg -O0 -y --------------------------------------------------------------------- $Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ Mon Jul 19 14:41:52 2010 Writing: talsrcimg.4dfp.hdr $Id: analyzeto4dfp.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ Reading: talsrcimg.hdr header size 348 bytes hdr.dime.datatype offset=70 value=2 hdr.dime.bitpix offset=72 value=8 hdr.hist.orient offset=252 value=-1 dimensionality 4 dimensions 256 256 256 1 Reading: talsrcimg.img Writing: talsrcimg.4dfp.img Writing: talsrcimg.4dfp.ifh ifh2hdr talsrcimg -r0to255 ori=2 --------------------------------------------------------------------- gauss_4dfp talsrcimg 1.1 --------------------------------------------------------------------- $Id: gauss_4dfp.c,v 1.2.2.1 2009/05/15 21:44:49 nicks Exp $ Reading: talsrcimg.4dfp.img Writing: talsrcimg_g11.4dfp.img image dimensions 256 256 256 padded to 288 288 288 processing volume 1$Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ Mon Jul 19 14:42:06 2010 Writing: talsrcimg_g11.4dfp.hdr Writing: talsrcimg_g11.4dfp.ifh including: talsrcimg.4dfp.img.rec in talsrcimg_g11.4dfp.img.rec --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 none talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 t4_read: talsrcimg_to_711-2C_as_mni_average_305_t4 read error t4_read: transform initialized to I4 rotation matrix determinant 1.000000 image alignment mode 4355 decimal 1103 hex -7.5000 -45.0000 -45.0000 7787.1611 16.0150 0.0000 -45.0000 -45.0000 8121.8125 16.0093 7.5000 -45.0000 -45.0000 7837.7671 15.9566 -7.5000 -37.5000 -45.0000 8196.0977 16.0294 0.0000 -37.5000 -45.0000 8541.3252 16.0309 7.5000 -37.5000 -45.0000 8255.5918 15.9876 -7.5000 -30.0000 -45.0000 8781.8896 16.1402 0.0000 -30.0000 -45.0000 9147.5459 16.1493 7.5000 -30.0000 -45.0000 8869.4092 16.1139 -7.5000 -22.5000 -45.0000 9244.9482 16.2402 0.0000 -22.5000 -45.0000 9669.5527 16.2467 7.5000 -22.5000 -45.0000 9355.7207 16.2070 -7.5000 -15.0000 -45.0000 9692.6064 16.2198 0.0000 -15.0000 -45.000010137.8887 16.2183 7.5000 -15.0000 -45.0000 9811.2559 16.1690 -7.5000 -7.5000 -45.000010219.5664 16.1060 0.0000 -7.5000 -45.000010652.3525 16.0997 7.5000 -7.5000 -45.000010305.8496 16.0453 -7.5000 0.0000 -45.000010703.2529 16.0150 0.0000 0.0000 -45.000011143.5371 16.0093 7.5000 0.0000 -45.000010785.5078 15.9566 -7.5000 7.5000 -45.000010311.4746 16.0294 0.0000 7.5000 -45.000010711.0732 16.0309 7.5000 7.5000 -45.000010381.5654 15.9876 -7.5000 15.0000 -45.0000 9654.2695 16.1402 0.0000 15.0000 -45.000010038.0391 16.1493 7.5000 15.0000 -45.0000 9714.0850 16.1139 -7.5000 22.5000 -45.0000 8869.4697 16.2380 0.0000 22.5000 -45.0000 9214.4531 16.2445 7.5000 22.5000 -45.0000 8901.9551 16.2048 -7.5000 30.0000 -45.0000 7956.3311 16.0037 0.0000 30.0000 -45.0000 8276.1191 16.0022 7.5000 30.0000 -45.0000 7998.7017 15.9535 -7.5000 37.5000 -45.0000 7407.7329 15.8914 0.0000 37.5000 -45.0000 7709.5347 15.8852 7.5000 37.5000 -45.0000 7415.0776 15.8315 -7.5000 45.0000 -45.0000 6624.8496 15.4004 0.0000 45.0000 -45.0000 6869.6650 15.3949 7.5000 45.0000 -45.0000 6616.2764 15.3442 -7.5000 -45.0000 -37.5000 8372.1406 15.9761 0.0000 -45.0000 -37.5000 8748.3232 15.9623 7.5000 -45.0000 -37.5000 8433.9756 15.8965 -7.5000 -37.5000 -37.5000 8817.7705 15.9875 0.0000 -37.5000 -37.5000 9221.0137 15.9828 7.5000 -37.5000 -37.5000 8874.8945 15.9244 -7.5000 -30.0000 -37.5000 9426.7383 16.0903 0.0000 -30.0000 -37.5000 9877.8496 16.0920 7.5000 -30.0000 -37.5000 9510.9717 16.0400 -7.5000 -22.5000 -37.5000 9898.5039 16.1850 0.0000 -22.5000 -37.500010410.6963 16.1822 7.5000 -22.5000 -37.500010024.2578 16.1269 -7.5000 -15.0000 -37.500010348.6523 16.1665 0.0000 -15.0000 -37.500010910.6133 16.1544 7.5000 -15.0000 -37.500010478.3906 16.0915 -7.5000 -7.5000 -37.500010873.5059 16.0608 0.0000 -7.5000 -37.500011457.3740 16.0442 7.5000 -7.5000 -37.500010995.6973 15.9770 -7.5000 0.0000 -37.500011369.8105 15.9761 0.0000 0.0000 -37.500011943.7100 15.9623 7.5000 0.0000 -37.500011499.3730 15.8965 -7.5000 7.5000 -37.500010933.6699 15.9875 0.0000 7.5000 -37.500011418.4805 15.9828 7.5000 7.5000 -37.500011035.8369 15.9244 -7.5000 15.0000 -37.500010205.8115 16.0903 0.0000 15.0000 -37.500010688.0225 16.0920 7.5000 15.0000 -37.500010288.9072 16.0400 -7.5000 22.5000 -37.5000 9343.1836 16.1828 0.0000 22.5000 -37.5000 9744.6797 16.1800 7.5000 22.5000 -37.5000 9382.0693 16.1247 -7.5000 30.0000 -37.5000 8342.6250 15.9511 0.0000 30.0000 -37.5000 8691.4336 15.9391 7.5000 30.0000 -37.5000 8369.3652 15.8770 -7.5000 37.5000 -37.5000 7739.6797 15.8468 0.0000 37.5000 -37.5000 8045.8911 15.8303 7.5000 37.5000 -37.5000 7758.4849 15.7640 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11.1629 -7.5000 -22.5000 15.0000 2737.0750 11.2557 0.0000 -22.5000 15.0000 2805.3098 10.9428 7.5000 -22.5000 15.0000 2798.1533 11.0342 -7.5000 -15.0000 15.0000 2773.7717 11.1736 0.0000 -15.0000 15.0000 2860.6335 10.7850 7.5000 -15.0000 15.0000 2844.5786 10.9327 -7.5000 -7.5000 15.0000 2770.9839 11.3599 0.0000 -7.5000 15.0000 2862.2173 11.0091 7.5000 -7.5000 15.0000 2845.8547 11.1154 -7.5000 0.0000 15.0000 2702.3716 11.8653 0.0000 0.0000 15.0000 2786.4067 11.5879 7.5000 0.0000 15.0000 2768.1113 11.6471 -7.5000 7.5000 15.0000 2602.1038 12.6173 0.0000 7.5000 15.0000 2666.1694 12.3612 7.5000 7.5000 15.0000 2651.5835 12.3688 -7.5000 15.0000 15.0000 2469.3005 13.6886 0.0000 15.0000 15.0000 2512.8208 13.4077 7.5000 15.0000 15.0000 2505.3408 13.4224 -7.5000 22.5000 15.0000 2337.1875 15.0712 0.0000 22.5000 15.0000 2377.8950 14.7962 7.5000 22.5000 15.0000 2368.6523 14.7737 -7.5000 30.0000 15.0000 2197.2688 16.8872 0.0000 30.0000 15.0000 2233.3455 16.5922 7.5000 30.0000 15.0000 2226.1965 16.6389 -7.5000 37.5000 15.0000 2054.0105 19.1080 0.0000 37.5000 15.0000 2083.8733 18.7403 7.5000 37.5000 15.0000 2069.9761 18.8441 -7.5000 45.0000 15.0000 1885.7101 21.9453 0.0000 45.0000 15.0000 1899.9954 21.5507 7.5000 45.0000 15.0000 1897.0269 21.6634 -7.5000 -45.0000 22.5000 2518.9709 12.5449 0.0000 -45.0000 22.5000 2552.6448 12.1484 7.5000 -45.0000 22.5000 2552.1946 12.3062 -7.5000 -37.5000 22.5000 2610.3667 11.9140 0.0000 -37.5000 22.5000 2642.0701 11.5922 7.5000 -37.5000 22.5000 2641.2363 11.7011 -7.5000 -30.0000 22.5000 2669.1577 11.5998 0.0000 -30.0000 22.5000 2704.8376 11.3280 7.5000 -30.0000 22.5000 2706.6458 11.4015 -7.5000 -22.5000 22.5000 2708.9929 11.3900 0.0000 -22.5000 22.5000 2769.0234 11.0881 7.5000 -22.5000 22.5000 2761.6360 11.1689 -7.5000 -15.0000 22.5000 2744.0120 11.3131 0.0000 -15.0000 22.5000 2816.4067 11.0592 7.5000 -15.0000 22.5000 2803.9189 11.1022 -7.5000 -7.5000 22.5000 2727.0281 11.5668 0.0000 -7.5000 22.5000 2798.1921 11.3600 7.5000 -7.5000 22.5000 2793.3276 11.3480 -7.5000 0.0000 22.5000 2657.6526 12.0827 0.0000 0.0000 22.5000 2719.6672 11.8840 7.5000 0.0000 22.5000 2714.1807 11.8953 -7.5000 7.5000 22.5000 2571.2766 12.8566 0.0000 7.5000 22.5000 2626.2363 12.6320 7.5000 7.5000 22.5000 2612.6785 12.6683 -7.5000 15.0000 22.5000 2447.4763 13.9294 0.0000 15.0000 22.5000 2493.8379 13.6748 7.5000 15.0000 22.5000 2479.3904 13.6319 -7.5000 22.5000 22.5000 2315.8054 15.3047 0.0000 22.5000 22.5000 2356.5928 14.9880 7.5000 22.5000 22.5000 2343.9053 14.9778 -7.5000 30.0000 22.5000 2172.5642 17.0974 0.0000 30.0000 22.5000 2206.8499 16.6861 7.5000 30.0000 22.5000 2197.2820 16.7261 -7.5000 37.5000 22.5000 2025.1768 19.2712 0.0000 37.5000 22.5000 2048.4080 18.7882 7.5000 37.5000 22.5000 2037.4432 18.9091 -7.5000 45.0000 22.5000 1854.8572 22.1970 0.0000 45.0000 22.5000 1877.0153 21.6930 7.5000 45.0000 22.5000 1878.8595 21.8033 -7.5000 -45.0000 30.0000 2513.8210 12.9712 0.0000 -45.0000 30.0000 2547.0508 12.6059 7.5000 -45.0000 30.0000 2541.5239 12.7227 -7.5000 -37.5000 30.0000 2593.0303 12.3012 0.0000 -37.5000 30.0000 2633.5256 11.9930 7.5000 -37.5000 30.0000 2626.3525 12.0772 -7.5000 -30.0000 30.0000 2635.3159 11.9279 0.0000 -30.0000 30.0000 2685.8357 11.6695 7.5000 -30.0000 30.0000 2677.1860 11.7296 -7.5000 -22.5000 30.0000 2664.9509 11.7104 0.0000 -22.5000 30.0000 2720.3640 11.3977 7.5000 -22.5000 30.0000 2709.6404 11.4792 -7.5000 -15.0000 30.0000 2686.9595 11.6737 0.0000 -15.0000 30.0000 2740.7063 11.4395 7.5000 -15.0000 30.0000 2734.1597 11.4820 -7.5000 -7.5000 30.0000 2661.8784 11.9515 0.0000 -7.5000 30.0000 2714.2349 11.7274 7.5000 -7.5000 30.0000 2707.9536 11.7243 -7.5000 0.0000 30.0000 2586.6365 12.4851 0.0000 0.0000 30.0000 2636.0952 12.2705 7.5000 0.0000 30.0000 2633.3179 12.2650 -7.5000 7.5000 30.0000 2508.5591 13.2967 0.0000 7.5000 30.0000 2549.7322 13.0606 7.5000 7.5000 30.0000 2546.5166 13.0763 -7.5000 15.0000 30.0000 2393.8450 14.3675 0.0000 15.0000 30.0000 2446.7832 14.1626 7.5000 15.0000 30.0000 2431.9277 14.1634 -7.5000 22.5000 30.0000 2281.5972 15.7182 0.0000 22.5000 30.0000 2319.8923 15.4536 7.5000 22.5000 30.0000 2306.3821 15.4866 -7.5000 30.0000 30.0000 2141.1782 17.4505 0.0000 30.0000 30.0000 2167.0249 17.1177 7.5000 30.0000 30.0000 2159.9014 17.1302 -7.5000 37.5000 30.0000 1979.1458 19.6455 0.0000 37.5000 30.0000 2000.9855 19.2254 7.5000 37.5000 30.0000 1999.2382 19.3229 -7.5000 45.0000 30.0000 1826.3243 22.5379 0.0000 45.0000 30.0000 1848.8997 22.0113 7.5000 45.0000 30.0000 1847.0850 22.1496 -7.5000 -45.0000 37.5000 2483.1196 13.5133 0.0000 -45.0000 37.5000 2519.4187 13.1541 7.5000 -45.0000 37.5000 2507.4026 13.2307 -7.5000 -37.5000 37.5000 2564.4172 12.7763 0.0000 -37.5000 37.5000 2606.3838 12.4325 7.5000 -37.5000 37.5000 2595.1138 12.5331 -7.5000 -30.0000 37.5000 2603.1348 12.3617 0.0000 -30.0000 37.5000 2653.0293 12.0244 7.5000 -30.0000 37.5000 2643.0515 12.1342 -7.5000 -22.5000 37.5000 2620.9136 12.1238 0.0000 -22.5000 37.5000 2672.1240 11.8352 7.5000 -22.5000 37.5000 2661.6523 11.9332 -7.5000 -15.0000 37.5000 2617.1541 12.1495 0.0000 -15.0000 37.5000 2666.4695 11.9109 7.5000 -15.0000 37.5000 2659.1130 11.9858 -7.5000 -7.5000 37.5000 2583.9250 12.4254 0.0000 -7.5000 37.5000 2630.0029 12.2174 7.5000 -7.5000 37.5000 2622.5544 12.2386 -7.5000 0.0000 37.5000 2516.5640 13.0136 0.0000 0.0000 37.5000 2553.6223 12.7798 7.5000 0.0000 37.5000 2547.7256 12.8103 -7.5000 7.5000 37.5000 2435.3872 13.8948 0.0000 7.5000 37.5000 2469.3342 13.6335 7.5000 7.5000 37.5000 2466.4888 13.6738 -7.5000 15.0000 37.5000 2334.8560 15.0251 0.0000 15.0000 37.5000 2373.7266 14.7715 7.5000 15.0000 37.5000 2367.2522 14.8251 -7.5000 22.5000 37.5000 2230.3401 16.3867 0.0000 22.5000 37.5000 2264.7175 16.1207 7.5000 22.5000 37.5000 2254.0444 16.1931 -7.5000 30.0000 37.5000 2100.9783 18.0815 0.0000 30.0000 37.5000 2124.5256 17.7770 7.5000 30.0000 37.5000 2112.8481 17.7934 -7.5000 37.5000 37.5000 1944.1434 20.2653 0.0000 37.5000 37.5000 1958.7305 19.9241 7.5000 37.5000 37.5000 1953.3195 19.9869 -7.5000 45.0000 37.5000 1795.1079 23.0758 0.0000 45.0000 37.5000 1808.7693 22.5801 7.5000 45.0000 37.5000 1812.3888 22.7223 -7.5000 -45.0000 45.0000 2430.0464 14.1340 0.0000 -45.0000 45.0000 2467.6528 13.7871 7.5000 -45.0000 45.0000 2456.2976 13.8451 -7.5000 -37.5000 45.0000 2506.5625 13.3415 0.0000 -37.5000 45.0000 2554.0129 12.9952 7.5000 -37.5000 45.0000 2542.0620 13.0774 -7.5000 -30.0000 45.0000 2549.2393 12.8772 0.0000 -30.0000 45.0000 2591.6086 12.5603 7.5000 -30.0000 45.0000 2587.0386 12.6829 -7.5000 -22.5000 45.0000 2563.0107 12.6841 0.0000 -22.5000 45.0000 2598.4639 12.3937 7.5000 -22.5000 45.0000 2593.6489 12.5182 -7.5000 -15.0000 45.0000 2540.1865 12.7620 0.0000 -15.0000 45.0000 2580.7302 12.5148 7.5000 -15.0000 45.0000 2573.7117 12.5949 -7.5000 -7.5000 45.0000 2496.1045 13.0991 0.0000 -7.5000 45.0000 2533.7119 12.8523 7.5000 -7.5000 45.0000 2525.0596 12.8792 -7.5000 0.0000 45.0000 2432.4629 13.7172 0.0000 0.0000 45.0000 2462.8943 13.4829 7.5000 0.0000 45.0000 2456.1165 13.4969 -7.5000 7.5000 45.0000 2355.6245 14.6653 0.0000 7.5000 45.0000 2386.0198 14.3937 7.5000 7.5000 45.0000 2388.1870 14.4346 -7.5000 15.0000 45.0000 2263.0486 15.7817 0.0000 15.0000 45.0000 2303.4451 15.5226 7.5000 15.0000 45.0000 2296.3164 15.5787 -7.5000 22.5000 45.0000 2164.0801 17.1500 0.0000 22.5000 45.0000 2192.1169 16.8465 7.5000 22.5000 45.0000 2182.3052 16.9217 -7.5000 30.0000 45.0000 2032.6929 18.8201 0.0000 30.0000 45.0000 2056.1672 18.5169 7.5000 30.0000 45.0000 2050.0662 18.5927 -7.5000 37.5000 45.0000 1894.7322 21.1917 0.0000 37.5000 45.0000 1913.0391 20.8933 7.5000 37.5000 45.0000 1906.2271 20.9330 -7.5000 45.0000 45.0000 1754.0306 24.0144 0.0000 45.0000 45.0000 1772.3909 23.6120 7.5000 45.0000 45.0000 1770.7308 23.6800 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 1283 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 rotation matrix determinant 1.000000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 1283 decimal 503 hex parameters 0.0000 -15.0000 7.5000 0.0000 0.0000 0.0000 eta,q 0.90403 10.57076 niter,ni,del,rscale 5 3 12.0000 1.2000 parameter 2 -0.561529 -> -0.500000 qaram 1.1500 parameters 1.9016 -11.5500 8.6537 -1.2424 -1.5962 -0.4664 eta,q 0.90762 10.67024 0.1179 0.1127 0.1060 0.0964 0.0941 0.0992 0.1064 0.1079 0.0994 0.0954 0.0923 0.0960 0.1007 0.1025 0.0945 0.0927 0.0925 0.0930 0.0976 0.0962 0.0918 0.0921 0.0922 0.0925 0.0965 0.0925 0.0931 0.0951 0.0929 0.0945 0.0986 0.0929 0.0960 0.0979 0.0956 0.0979 0.1009 0.0969 0.0975 0.1026 0.0989 0.1009 niter,ni,del,rscale 5 3 12.0000 1.2000 parameters 2.8122 -11.5805 8.8007 -1.2951 -1.6479 -0.4737 eta,q 0.90727 10.63852 0.1069 0.1032 0.1018 0.0964 0.0975 0.0998 0.0999 0.1001 0.0958 0.0963 0.0928 0.0971 0.0945 0.0955 0.0927 0.0942 0.0920 0.0942 0.0924 0.0927 0.0927 0.0927 0.0927 0.0927 0.0939 0.0934 0.0939 0.0938 0.0929 0.0938 0.0961 0.0972 0.0967 0.0951 0.0942 0.0970 0.0997 0.1062 0.0995 0.0975 0.0965 0.1001 niter,ni,del,rscale 4 3 12.0000 1.2000 parameters 2.7621 -11.5591 8.8009 -1.2931 -1.6036 -0.5018 eta,q 0.90731 10.63899 0.1036 0.1031 0.1014 0.0964 0.0977 0.0998 0.0973 0.0999 0.0954 0.0963 0.0929 0.0970 0.0931 0.0954 0.0926 0.0942 0.0920 0.0941 0.0927 0.0927 0.0927 0.0927 0.0927 0.0927 0.0952 0.0934 0.0940 0.0938 0.0928 0.0938 0.0972 0.0969 0.0969 0.0950 0.0941 0.0970 0.1036 0.1056 0.1000 0.0973 0.0964 0.1001 registration optimization eta report parameter search radius 6.0000 6.9000 6.0000 6.0000 6.0000 6.0000 100000*second partial in parameter space 30. 24. 23. 10. 14. 19. 0.1036 0.1031 0.1014 0.0964 0.0977 0.0998 0.0973 0.0999 0.0954 0.0963 0.0929 0.0970 0.0931 0.0954 0.0926 0.0942 0.0920 0.0941 0.0927 0.0927 0.0927 0.0927 0.0927 0.0927 0.0952 0.0934 0.0940 0.0938 0.0928 0.0938 0.0972 0.0969 0.0969 0.0950 0.0941 0.0970 0.1036 0.1056 0.1000 0.0973 0.0964 0.1001 2.7621 -11.5591 8.8009 -1.2931 -1.6036 -0.5018 eta,q 0.90731 10.63899 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 3335 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 3335 decimal D07 hex parameters 2.7621 -11.5591 8.8009 -0.0430 -0.0287 -0.0646 0.8124 2.8173 -0.8755 2.2321 -2.7984 -2.2558 eta,q 0.91014 10.59054 niter,ni,del,rscale 5 3 5.0000 1.2000 parameter 4 8.353430 -> 0.500000 qaram 1.1500 parameter 5********** -> 0.500000 qaram 1.1500 parameter 6 1.122678 -> 0.500000 qaram 1.1500 parameter 12 1.195484 -> 0.500000 qaram 1.1500 parameters 2.2794 -11.1370 9.5705 -4.1830 -4.1687 -4.2046 -1.4623 1.0397 -1.0880 1.5668 -2.7169 -6.3958 eta,q 0.92825 10.29096 0.0914 0.0910 0.0925 0.0783 0.0741 0.0728 0.0750 0.0766 0.0751 0.0756 0.0751 0.0715 0.0904 0.0903 0.0913 0.0820 0.0769 0.0736 0.0740 0.0745 0.0741 0.0740 0.0741 0.0716 0.0899 0.0899 0.0904 0.0858 0.0800 0.0752 0.0736 0.0733 0.0735 0.0733 0.0734 0.0722 0.0899 0.0898 0.0898 0.0897 0.0831 0.0777 0.0740 0.0737 0.0733 0.0733 0.0732 0.0732 0.0905 0.0898 0.0897 0.0938 0.0858 0.0817 0.0749 0.0754 0.0735 0.0739 0.0734 0.0744 0.0917 0.0899 0.0899 0.0981 0.0885 0.0862 0.0763 0.0782 0.0742 0.0749 0.0740 0.0759 0.0935 0.0903 0.0904 0.1026 0.0918 0.0913 0.0781 0.0817 0.0753 0.0764 0.0750 0.0775 niter,ni,del,rscale 7 3 5.0000 1.2000 parameter 4 1.146975 -> 0.500000 qaram 1.3225 parameter 5 1.351002 -> 0.500000 qaram 1.3225 parameter 10 -0.517086 -> -0.500000 qaram 1.1500 parameters 2.5208 -10.6212 8.9124 -8.9440 -8.9297 -6.1725 -0.4584 1.3105 -0.2107 5.7068 -2.9321 -10.0540 eta,q 0.93916 10.19055 0.0763 0.0745 0.0726 0.0657 0.0618 0.0647 0.0673 0.0688 0.0654 0.0684 0.0629 0.0615 0.0740 0.0731 0.0718 0.0658 0.0618 0.0634 0.0649 0.0657 0.0638 0.0658 0.0620 0.0609 0.0725 0.0722 0.0714 0.0678 0.0635 0.0626 0.0632 0.0634 0.0628 0.0636 0.0614 0.0609 0.0717 0.0717 0.0716 0.0714 0.0661 0.0621 0.0624 0.0623 0.0623 0.0622 0.0612 0.0612 0.0718 0.0716 0.0722 0.0760 0.0696 0.0630 0.0625 0.0626 0.0623 0.0614 0.0615 0.0621 0.0728 0.0720 0.0734 0.0812 0.0733 0.0662 0.0634 0.0647 0.0629 0.0613 0.0622 0.0635 0.0749 0.0728 0.0749 0.0866 0.0763 0.0712 0.0652 0.0683 0.0642 0.0621 0.0631 0.0652 niter,ni,del,rscale 7 3 5.0000 1.2000 parameter 2 -0.784049 -> -0.500000 qaram 1.1500 parameter 3 0.576565 -> 0.500000 qaram 1.1500 parameter 10 -0.540681 -> -0.500000 qaram 1.3225 parameters 2.2914 -9.2412 7.5324 -11.0247 -12.3704 -6.3946 0.0317 0.9053 0.3265 10.4678 -3.2548 -12.6816 eta,q 0.94441 10.11680 0.0648 0.0685 0.0589 0.0636 0.0603 0.0613 0.0618 0.0629 0.0604 0.0651 0.0574 0.0566 0.0624 0.0654 0.0584 0.0607 0.0583 0.0594 0.0595 0.0600 0.0587 0.0620 0.0565 0.0559 0.0611 0.0628 0.0585 0.0584 0.0572 0.0583 0.0579 0.0579 0.0577 0.0591 0.0560 0.0556 0.0608 0.0608 0.0591 0.0584 0.0581 0.0572 0.0573 0.0572 0.0573 0.0572 0.0558 0.0558 0.0617 0.0596 0.0602 0.0611 0.0611 0.0571 0.0576 0.0581 0.0573 0.0560 0.0560 0.0565 0.0637 0.0591 0.0618 0.0657 0.0649 0.0590 0.0588 0.0607 0.0581 0.0559 0.0566 0.0577 0.0666 0.0591 0.0637 0.0714 0.0694 0.0628 0.0607 0.0646 0.0596 0.0570 0.0578 0.0594 niter,ni,del,rscale 7 3 5.0000 1.2000 parameter 2 -0.766876 -> -0.500000 qaram 1.3225 parameters 2.1521 -7.6542 7.1060 -11.2360 -14.1379 -6.5637 0.1998 0.6684 0.2127 12.4260 -2.9990 -14.8840 eta,q 0.94789 10.09599 0.0602 0.0664 0.0553 0.0606 0.0579 0.0578 0.0572 0.0593 0.0561 0.0624 0.0544 0.0535 0.0575 0.0622 0.0537 0.0574 0.0551 0.0554 0.0549 0.0560 0.0543 0.0583 0.0533 0.0526 0.0559 0.0585 0.0529 0.0545 0.0532 0.0539 0.0533 0.0536 0.0532 0.0551 0.0526 0.0521 0.0556 0.0556 0.0530 0.0528 0.0529 0.0528 0.0528 0.0528 0.0528 0.0528 0.0523 0.0523 0.0564 0.0536 0.0537 0.0536 0.0551 0.0529 0.0533 0.0537 0.0533 0.0523 0.0525 0.0531 0.0584 0.0529 0.0552 0.0571 0.0590 0.0550 0.0547 0.0564 0.0544 0.0538 0.0531 0.0544 0.0613 0.0535 0.0572 0.0623 0.0634 0.0592 0.0567 0.0605 0.0563 0.0573 0.0541 0.0562 niter,ni,del,rscale 7 3 5.0000 1.2000 parameters 2.0757 -6.9515 6.8752 -11.0572 -14.7196 -6.5320 0.1650 0.6221 0.0979 13.3070 -2.8035 -16.0829 eta,q 0.94865 10.10741 0.0574 0.0621 0.0546 0.0599 0.0586 0.0573 0.0559 0.0588 0.0550 0.0609 0.0536 0.0533 0.0544 0.0576 0.0528 0.0565 0.0552 0.0548 0.0535 0.0553 0.0532 0.0565 0.0525 0.0522 0.0526 0.0542 0.0517 0.0534 0.0527 0.0529 0.0520 0.0526 0.0520 0.0534 0.0517 0.0515 0.0521 0.0521 0.0516 0.0515 0.0515 0.0516 0.0516 0.0516 0.0516 0.0516 0.0514 0.0514 0.0529 0.0517 0.0523 0.0520 0.0528 0.0515 0.0521 0.0524 0.0520 0.0517 0.0517 0.0520 0.0550 0.0531 0.0537 0.0552 0.0565 0.0538 0.0536 0.0551 0.0533 0.0541 0.0523 0.0532 0.0580 0.0562 0.0556 0.0602 0.0608 0.0583 0.0559 0.0593 0.0553 0.0584 0.0533 0.0549 niter,ni,del,rscale 6 3 5.0000 1.2000 parameters 2.0283 -6.7805 6.7414 -10.9507 -14.9528 -6.5302 0.1423 0.5965 0.1015 13.6661 -2.6574 -16.5395 eta,q 0.94876 10.11150 0.0570 0.0595 0.0545 0.0596 0.0590 0.0573 0.0556 0.0587 0.0549 0.0601 0.0534 0.0536 0.0538 0.0555 0.0526 0.0562 0.0554 0.0547 0.0532 0.0552 0.0530 0.0558 0.0523 0.0523 0.0519 0.0527 0.0515 0.0531 0.0527 0.0527 0.0517 0.0524 0.0517 0.0529 0.0515 0.0515 0.0514 0.0513 0.0513 0.0513 0.0512 0.0513 0.0513 0.0513 0.0513 0.0513 0.0512 0.0512 0.0521 0.0518 0.0519 0.0518 0.0522 0.0512 0.0518 0.0521 0.0517 0.0518 0.0515 0.0516 0.0542 0.0542 0.0532 0.0551 0.0558 0.0537 0.0534 0.0549 0.0530 0.0547 0.0522 0.0527 0.0574 0.0582 0.0551 0.0602 0.0602 0.0584 0.0556 0.0592 0.0550 0.0593 0.0532 0.0543 niter,ni,del,rscale 5 3 5.0000 1.2000 parameters 2.0109 -6.7121 6.6846 -10.9063 -15.0481 -6.5332 0.1252 0.5739 0.0934 13.8209 -2.5858 -16.7227 eta,q 0.94879 10.11317 0.0571 0.0590 0.0547 0.0595 0.0592 0.0573 0.0556 0.0587 0.0549 0.0598 0.0533 0.0538 0.0538 0.0551 0.0527 0.0561 0.0556 0.0547 0.0532 0.0551 0.0529 0.0556 0.0523 0.0524 0.0518 0.0524 0.0515 0.0530 0.0528 0.0527 0.0517 0.0524 0.0517 0.0527 0.0515 0.0515 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0520 0.0519 0.0518 0.0519 0.0521 0.0512 0.0518 0.0520 0.0517 0.0520 0.0515 0.0515 0.0540 0.0544 0.0530 0.0552 0.0555 0.0537 0.0533 0.0548 0.0529 0.0549 0.0522 0.0525 0.0572 0.0586 0.0548 0.0603 0.0600 0.0585 0.0555 0.0592 0.0549 0.0596 0.0532 0.0541 niter,ni,del,rscale 4 3 5.0000 1.2000 parameters 2.0031 -6.6836 6.6639 -10.8849 -15.0882 -6.5370 0.1190 0.5616 0.0852 13.8826 -2.5555 -16.7920 eta,q 0.94879 10.11378 0.0572 0.0588 0.0547 0.0595 0.0593 0.0573 0.0556 0.0587 0.0549 0.0597 0.0533 0.0539 0.0538 0.0549 0.0528 0.0561 0.0556 0.0547 0.0532 0.0552 0.0529 0.0555 0.0522 0.0524 0.0518 0.0523 0.0516 0.0530 0.0528 0.0527 0.0517 0.0524 0.0517 0.0526 0.0515 0.0516 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0520 0.0519 0.0517 0.0519 0.0520 0.0512 0.0518 0.0520 0.0516 0.0520 0.0515 0.0515 0.0540 0.0546 0.0529 0.0553 0.0555 0.0537 0.0533 0.0548 0.0529 0.0551 0.0522 0.0525 0.0571 0.0588 0.0547 0.0603 0.0599 0.0585 0.0555 0.0592 0.0549 0.0598 0.0533 0.0540 registration optimization eta report parameter search radius 2.4000 3.1740 2.7600 9.5220 9.5220 8.2800 7.2000 7.2000 7.2000 9.5220 7.2000 8.2800 100000*second partial in parameter space 103. 75. 46. 9. 9. 10. 8. 15. 7. 9. 4. 4. 0.0572 0.0588 0.0547 0.0595 0.0593 0.0573 0.0556 0.0587 0.0549 0.0597 0.0533 0.0539 0.0538 0.0549 0.0528 0.0561 0.0556 0.0547 0.0532 0.0552 0.0529 0.0555 0.0522 0.0524 0.0518 0.0523 0.0516 0.0530 0.0528 0.0527 0.0517 0.0524 0.0517 0.0526 0.0515 0.0516 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0512 0.0520 0.0519 0.0517 0.0519 0.0520 0.0512 0.0518 0.0520 0.0516 0.0520 0.0515 0.0515 0.0540 0.0546 0.0529 0.0553 0.0555 0.0537 0.0533 0.0548 0.0529 0.0551 0.0522 0.0525 0.0571 0.0588 0.0547 0.0603 0.0599 0.0585 0.0555 0.0592 0.0549 0.0598 0.0533 0.0540 2.0031 -6.6836 6.6639 -10.8849 -15.0882 -6.5370 0.1190 0.5616 0.0852 13.8826 -2.5555 -16.7920 eta,q 0.94879 10.11378 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 2311 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 2311 decimal 907 hex parameters 2.0031 -6.6836 6.6639 -10.8849 -15.0882 -6.5370 0.1190 0.5616 0.0852 13.8826 -2.5555 -16.7920 eta,q 0.94879 10.11378 niter,ni,del,rscale 5 3 5.0000 0.8000 parameters 1.9814 -6.6011 6.5926 -10.2753 -14.7384 -5.8629 -0.0700 0.7963 0.1032 14.0704 -2.5079 -17.2774 eta,q 0.94910 10.15310 0.0539 0.0535 0.0524 0.0545 0.0541 0.0539 0.0529 0.0553 0.0527 0.0537 0.0520 0.0517 0.0524 0.0523 0.0517 0.0530 0.0527 0.0528 0.0518 0.0532 0.0517 0.0523 0.0514 0.0513 0.0515 0.0516 0.0513 0.0518 0.0517 0.0517 0.0511 0.0516 0.0511 0.0513 0.0510 0.0510 0.0512 0.0512 0.0512 0.0512 0.0511 0.0511 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0516 0.0513 0.0514 0.0512 0.0512 0.0509 0.0512 0.0512 0.0511 0.0511 0.0510 0.0511 0.0525 0.0520 0.0519 0.0519 0.0520 0.0514 0.0520 0.0525 0.0517 0.0519 0.0514 0.0515 0.0540 0.0531 0.0526 0.0533 0.0535 0.0530 0.0532 0.0547 0.0527 0.0533 0.0520 0.0522 niter,ni,del,rscale 4 3 5.0000 0.7000 parameters 1.9533 -6.5503 6.6038 -10.3940 -14.7541 -5.6602 -0.1049 0.8120 0.1293 14.1960 -2.5111 -17.4368 eta,q 0.94913 10.15670 0.0530 0.0527 0.0519 0.0531 0.0531 0.0531 0.0525 0.0541 0.0522 0.0531 0.0517 0.0516 0.0518 0.0517 0.0514 0.0519 0.0520 0.0521 0.0516 0.0524 0.0515 0.0519 0.0513 0.0512 0.0511 0.0512 0.0510 0.0512 0.0513 0.0513 0.0510 0.0513 0.0510 0.0511 0.0510 0.0510 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0512 0.0510 0.0510 0.0512 0.0511 0.0509 0.0511 0.0512 0.0510 0.0511 0.0510 0.0510 0.0520 0.0516 0.0513 0.0520 0.0519 0.0515 0.0516 0.0523 0.0515 0.0517 0.0513 0.0513 0.0531 0.0525 0.0519 0.0535 0.0533 0.0530 0.0526 0.0541 0.0522 0.0528 0.0517 0.0518 niter,ni,del,rscale 3 3 5.0000 0.6000 parameters 1.9501 -6.5236 6.6048 -10.4159 -14.7474 -5.5302 -0.1265 0.8480 0.1547 14.2432 -2.5264 -17.5184 eta,q 0.94915 10.15940 0.0525 0.0522 0.0516 0.0526 0.0525 0.0525 0.0521 0.0533 0.0519 0.0525 0.0515 0.0514 0.0516 0.0515 0.0512 0.0517 0.0517 0.0517 0.0514 0.0520 0.0513 0.0516 0.0511 0.0511 0.0510 0.0510 0.0510 0.0511 0.0511 0.0512 0.0510 0.0512 0.0510 0.0510 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0508 0.0508 0.0509 0.0508 0.0508 0.0509 0.0510 0.0510 0.0510 0.0511 0.0510 0.0509 0.0510 0.0511 0.0510 0.0510 0.0509 0.0509 0.0516 0.0514 0.0512 0.0517 0.0516 0.0514 0.0514 0.0519 0.0513 0.0515 0.0512 0.0512 0.0525 0.0521 0.0516 0.0527 0.0527 0.0525 0.0521 0.0533 0.0518 0.0524 0.0515 0.0515 niter,ni,del,rscale 2 3 5.0000 0.5000 parameters 1.9466 -6.5125 6.6097 -10.4193 -14.7161 -5.4192 -0.1465 0.8819 0.1766 14.2454 -2.5478 -17.5452 eta,q 0.94917 10.16199 0.0520 0.0517 0.0514 0.0521 0.0521 0.0520 0.0517 0.0526 0.0516 0.0519 0.0513 0.0513 0.0513 0.0513 0.0511 0.0514 0.0515 0.0515 0.0512 0.0517 0.0512 0.0513 0.0510 0.0510 0.0510 0.0510 0.0509 0.0510 0.0510 0.0511 0.0509 0.0510 0.0509 0.0509 0.0509 0.0509 0.0509 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0510 0.0509 0.0509 0.0510 0.0509 0.0509 0.0509 0.0510 0.0509 0.0510 0.0509 0.0509 0.0514 0.0512 0.0511 0.0514 0.0514 0.0512 0.0512 0.0516 0.0511 0.0513 0.0511 0.0510 0.0520 0.0517 0.0514 0.0521 0.0521 0.0520 0.0517 0.0525 0.0515 0.0519 0.0513 0.0513 niter,ni,del,rscale 1 3 5.0000 0.4000 parameters 1.9453 -6.5054 6.6190 -10.4234 -14.6796 -5.3083 -0.1617 0.9121 0.1832 14.2253 -2.5818 -17.5487 eta,q 0.94918 10.16425 0.0516 0.0514 0.0512 0.0517 0.0516 0.0516 0.0514 0.0520 0.0513 0.0515 0.0511 0.0511 0.0511 0.0511 0.0510 0.0512 0.0512 0.0512 0.0511 0.0513 0.0510 0.0511 0.0510 0.0510 0.0509 0.0509 0.0509 0.0509 0.0510 0.0510 0.0509 0.0510 0.0509 0.0509 0.0509 0.0509 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0511 0.0511 0.0510 0.0512 0.0512 0.0511 0.0511 0.0513 0.0510 0.0512 0.0510 0.0510 0.0516 0.0514 0.0512 0.0517 0.0516 0.0515 0.0514 0.0519 0.0513 0.0515 0.0511 0.0511 registration optimization eta report parameter search radius 0.8000 0.8000 0.8000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 100000*second partial in parameter space 115. 89. 54. 14. 14. 13. 10. 20. 8. 13. 5. 5. 0.0516 0.0514 0.0512 0.0517 0.0516 0.0516 0.0514 0.0520 0.0513 0.0515 0.0511 0.0511 0.0511 0.0511 0.0510 0.0512 0.0512 0.0512 0.0511 0.0513 0.0510 0.0511 0.0510 0.0510 0.0509 0.0509 0.0509 0.0509 0.0510 0.0510 0.0509 0.0510 0.0509 0.0509 0.0509 0.0509 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0511 0.0511 0.0510 0.0512 0.0512 0.0511 0.0511 0.0513 0.0510 0.0512 0.0510 0.0510 0.0516 0.0514 0.0512 0.0517 0.0516 0.0515 0.0514 0.0519 0.0513 0.0515 0.0511 0.0511 1.9453 -6.5054 6.6190 -10.4234 -14.6796 -5.3083 -0.1617 0.9121 0.1832 14.2253 -2.5818 -17.5487 eta,q 0.94918 10.16425 --------------------------------------------------------------------- imgreg_4dfp /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 2311 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.3 2007/08/04 04:19:24 nicks Exp $ /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /Users/heatherreynolds/Applications/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 $Id: fimgreg.f,v 1.1 2007/05/04 22:33:59 nicks Exp $ image alignment mode 2311 decimal 907 hex parameters 1.9453 -6.5054 6.6190 -10.4234 -14.6796 -5.3083 -0.1617 0.9121 0.1832 14.2253 -2.5818 -17.5487 eta,q 0.94918 10.16425 niter,ni,del,rscale 5 3 5.0000 0.8000 parameters 1.9623 -6.5423 6.6553 -10.5778 -14.9185 -5.6425 -0.0939 0.7935 0.1621 14.2650 -2.5160 -17.4444 eta,q 0.94911 10.15142 0.0538 0.0529 0.0523 0.0537 0.0534 0.0533 0.0531 0.0548 0.0526 0.0536 0.0520 0.0520 0.0521 0.0518 0.0515 0.0522 0.0521 0.0521 0.0519 0.0527 0.0517 0.0522 0.0514 0.0514 0.0511 0.0511 0.0510 0.0512 0.0512 0.0512 0.0511 0.0514 0.0511 0.0512 0.0510 0.0510 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0511 0.0511 0.0510 0.0512 0.0512 0.0511 0.0511 0.0514 0.0511 0.0512 0.0510 0.0510 0.0521 0.0519 0.0514 0.0523 0.0523 0.0523 0.0518 0.0529 0.0517 0.0520 0.0514 0.0513 0.0536 0.0532 0.0521 0.0542 0.0542 0.0545 0.0530 0.0553 0.0527 0.0535 0.0519 0.0519 niter,ni,del,rscale 4 3 5.0000 0.7000 parameters 1.9615 -6.5269 6.6111 -10.4378 -14.8349 -5.6400 -0.1149 0.8161 0.1460 14.2691 -2.5049 -17.4816 eta,q 0.94913 10.15550 0.0531 0.0526 0.0519 0.0533 0.0531 0.0530 0.0525 0.0541 0.0522 0.0530 0.0517 0.0517 0.0519 0.0517 0.0513 0.0521 0.0521 0.0520 0.0516 0.0524 0.0515 0.0518 0.0513 0.0513 0.0511 0.0511 0.0510 0.0513 0.0513 0.0512 0.0510 0.0513 0.0510 0.0511 0.0510 0.0510 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0511 0.0510 0.0510 0.0511 0.0510 0.0509 0.0511 0.0512 0.0510 0.0511 0.0510 0.0510 0.0519 0.0516 0.0514 0.0518 0.0518 0.0517 0.0516 0.0523 0.0515 0.0518 0.0513 0.0513 0.0531 0.0525 0.0520 0.0531 0.0531 0.0533 0.0525 0.0541 0.0522 0.0530 0.0517 0.0517 niter,ni,del,rscale 3 3 5.0000 0.6000 parameters 1.9518 -6.5137 6.6010 -10.4117 -14.7683 -5.5357 -0.1268 0.8496 0.1567 14.2659 -2.5234 -17.5335 eta,q 0.94915 10.15922 0.0525 0.0521 0.0516 0.0527 0.0526 0.0525 0.0521 0.0533 0.0519 0.0524 0.0515 0.0515 0.0516 0.0515 0.0512 0.0517 0.0518 0.0517 0.0514 0.0520 0.0513 0.0516 0.0511 0.0511 0.0510 0.0510 0.0509 0.0511 0.0512 0.0512 0.0510 0.0512 0.0510 0.0510 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0508 0.0508 0.0508 0.0508 0.0509 0.0511 0.0510 0.0510 0.0510 0.0510 0.0509 0.0510 0.0511 0.0510 0.0510 0.0509 0.0509 0.0516 0.0514 0.0512 0.0516 0.0516 0.0514 0.0514 0.0519 0.0513 0.0516 0.0512 0.0511 0.0525 0.0521 0.0516 0.0527 0.0526 0.0525 0.0521 0.0533 0.0519 0.0524 0.0515 0.0515 niter,ni,del,rscale 2 3 5.0000 0.5000 parameters 1.9473 -6.5093 6.6070 -10.4141 -14.7210 -5.4201 -0.1473 0.8806 0.1721 14.2576 -2.5529 -17.5548 eta,q 0.94917 10.16201 0.0520 0.0517 0.0514 0.0521 0.0521 0.0520 0.0517 0.0526 0.0516 0.0519 0.0513 0.0513 0.0513 0.0513 0.0511 0.0514 0.0515 0.0515 0.0512 0.0517 0.0512 0.0513 0.0510 0.0510 0.0510 0.0510 0.0509 0.0510 0.0511 0.0511 0.0509 0.0511 0.0509 0.0509 0.0509 0.0509 0.0508 0.0509 0.0509 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0510 0.0509 0.0509 0.0510 0.0509 0.0509 0.0509 0.0510 0.0509 0.0510 0.0509 0.0509 0.0514 0.0512 0.0511 0.0514 0.0513 0.0512 0.0512 0.0516 0.0512 0.0513 0.0511 0.0510 0.0520 0.0517 0.0514 0.0521 0.0521 0.0520 0.0517 0.0526 0.0515 0.0519 0.0513 0.0513 niter,ni,del,rscale 1 3 5.0000 0.4000 parameters 1.9455 -6.5037 6.6167 -10.4257 -14.6770 -5.3083 -0.1609 0.9138 0.1904 14.2339 -2.5953 -17.5560 eta,q 0.94918 10.16433 0.0516 0.0514 0.0512 0.0516 0.0517 0.0516 0.0514 0.0520 0.0513 0.0515 0.0511 0.0511 0.0511 0.0511 0.0510 0.0512 0.0512 0.0512 0.0511 0.0513 0.0510 0.0511 0.0510 0.0510 0.0509 0.0509 0.0509 0.0509 0.0510 0.0510 0.0509 0.0510 0.0509 0.0509 0.0509 0.0509 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0511 0.0511 0.0510 0.0512 0.0512 0.0511 0.0511 0.0513 0.0510 0.0512 0.0510 0.0510 0.0516 0.0514 0.0512 0.0517 0.0516 0.0515 0.0514 0.0519 0.0513 0.0516 0.0511 0.0511 registration optimization eta report parameter search radius 0.8000 0.8000 0.8000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 2.4000 100000*second partial in parameter space 115. 89. 54. 14. 14. 13. 9. 20. 8. 13. 5. 5. 0.0516 0.0514 0.0512 0.0516 0.0517 0.0516 0.0514 0.0520 0.0513 0.0515 0.0511 0.0511 0.0511 0.0511 0.0510 0.0512 0.0512 0.0512 0.0511 0.0513 0.0510 0.0511 0.0510 0.0510 0.0509 0.0509 0.0509 0.0509 0.0510 0.0510 0.0509 0.0510 0.0509 0.0509 0.0509 0.0509 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0508 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0509 0.0511 0.0511 0.0510 0.0512 0.0512 0.0511 0.0511 0.0513 0.0510 0.0512 0.0510 0.0510 0.0516 0.0514 0.0512 0.0517 0.0516 0.0515 0.0514 0.0519 0.0513 0.0516 0.0511 0.0511 1.9455 -6.5037 6.6167 -10.4257 -14.6770 -5.3083 -0.1609 0.9138 0.1904 14.2339 -2.5953 -17.5560 eta,q 0.94918 10.16433 --------------------------------------------------------------------- compute_vox2vox talsrcimg talsrcimg_to_711-2C_as_mni_average_305_t4 /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305 --------------------------------------------------------------------- $Id: compute_vox2vox.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ Reading: talsrcimg.4dfp.ifh Reading: talsrcimg_to_711-2C_as_mni_average_305_t4 Reading: /Users/heatherreynolds/Applications/freesurfer/average/711-2C_as_mni_average_305.4dfp.ifh Writing: talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt start time Mon Jul 19 14:41:51 BST 2010 end time Mon Jul 19 14:42:31 BST 2010 mpr2mni305 success -------------------------------------------- tkregister2_cmdl --mov nu.mgz --targ /Users/heatherreynolds/Applications/freesurfer/average/mni305.cor.mgz --xfmout transforms/talairach.auto.xfm --vox2vox talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt --noedit --reg talsrcimg.reg.tmp.dat tkregister_tcl /Users/heatherreynolds/Applications/freesurfer/lib/tcl/tkregister2.tcl Vox2Vox Matrix 0.896 -0.002 -0.009 12.766; 0.002 0.853 -0.142 43.124; 0.026 0.176 0.947 -12.435; 0.000 0.000 0.000 1.000; target volume /Users/heatherreynolds/Applications/freesurfer/average/mni305.cor.mgz movable volume nu.mgz reg file talsrcimg.reg.tmp.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.86.2.12 2009/03/19 22:04:20 greve Exp $ Diagnostic Level -1 INFO: loading target /Users/heatherreynolds/Applications/freesurfer/average/mni305.cor.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable nu.mgz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.896 0.009 -0.002 1.955; -0.026 0.947 -0.176 6.564; 0.002 0.142 0.853 -6.361; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.896 0.009 -0.002 1.955; -0.026 0.947 -0.176 6.564; 0.002 0.142 0.853 -6.361; 0.000 0.000 0.000 1.000; Determinant 0.746297 subject = subject-unknown RegMat --------------------------- 0.896 0.009 -0.002 1.955; -0.026 0.947 -0.176 6.564; 0.002 0.142 0.853 -6.361; 0.000 0.000 0.000 1.000; register: file talsrcimg.reg.tmp.dat written talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt -> transforms/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt talsrcimg.4dfp.hdr talsrcimg.4dfp.ifh talsrcimg.4dfp.img talsrcimg.4dfp.img.rec talsrcimg.hdr talsrcimg.img talsrcimg.mat talsrcimg.reg.tmp.dat talsrcimg_g11.4dfp.hdr talsrcimg_g11.4dfp.ifh talsrcimg_g11.4dfp.img talsrcimg_g11.4dfp.img.rec talsrcimg_to_711-2C_as_mni_average_305_t4 -------------------------------------------- Mon Jul 19 14:42:32 BST 2010 talairach_avi done \n cp transforms/talairach.auto.xfm transforms/talairach.xfm \n #-------------------------------------------- #@# Talairach Failure Detection Mon Jul 19 14:42:33 BST 2010 /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.8245, pval=0.8469 >= threshold=0.0050) \n awk -f /Users/heatherreynolds/Applications/freesurfer/bin/extract_talairach_avi_QA.awk /Users/heatherreynolds/Applications/freesurfer/subjects/MCI32/mri/transforms/talairach_avi.log \n TalAviQA: 0.94918 z-score: -6 ERROR: Talairach QA check failed! z-score = -6 <= -6 = threshold Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach Darwin geoff-imac.smb.man.ac.uk 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; root:xnu-1504.7.4~1/RELEASE_I386 i386 recon-all exited with ERRORS at Mon Jul 19 14:42:33 BST 2010 geoff-imac:~ heatherreynolds$