setenv SUBJECTS_DIR /media/Data/Temple/Temple_Tracula
set subjlist = (31313422_10944)
set runlist = (1)
set dcmroot = /media/Data/Temple/Temple_Tracula
set dcmlist = (31313422_10944/dti_dicom/31313422_10944.MR.Temple.9.1.20140905.143350.1f1bo1k.dcm)
set bvecfile =  ( 31313422_10944/DTI_31313422_10944_MR1/31313422_10944_MR1_seq9_bvecs )
set bvalfile = (31313422_10944/DTI_31313422_10944_MR1/31313422_10944_MR1_seq9_bvals  )
set doeddy = 1
set dorotbvecs = 1
set usemaskanat = 1
set thrbet = 0.3
set doregflt = 0
set doregbbr = 1
set doregmni = 1
set mnitemp = /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz
set ncpts = (6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5)