Fri Dec 4 16:39:02 CST 2015 /media/Data/Temple/Temple_Tracula /usr/local/freesurfer/bin/trac-all -path -s 31313422_10944 -c /media/Data/Temple/Temple_Tracula/31313422_10944/31313422_10944.dmrirc Subject 31313422_10944 SUBJECTS_DIR /media/Data/Temple/Temple_Tracula FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-504.12.2.el6.x86_64 #1 SMP Sun Feb 1 12:14:02 EST 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 126966 total used free shared buffers cached Mem: 16275144 14705088 1570056 8364 778444 10185992 -/+ buffers/cache: 3740652 12534492 Swap: 8208380 311588 7896792 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:39:02-GMT BuildTimeStamp: Aug 16 2014 05:13:24 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:39:02-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:39:02-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:39:02-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:39:02-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:39:02-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:39:02-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /projects/p20394/software/freesurfer-v5.3.0 New invocation of trac-paths root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-504.12.2.el6.x86_64 #1 SMP Sun Feb 1 12:14:02 EST 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 126966 total used free shared buffers cached Mem: 16275144 14465868 1809276 8364 778448 10186672 -/+ buffers/cache: 3500748 12774396 Swap: 8208380 311588 7896792 #------------------------------------- /usr/local/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Fri Dec 4 16:39:04 CST 2015 rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/bin/dmri_paths --outdir /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr --dwi /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/dwi.nii.gz --grad /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvecs --bval /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvals --mask /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /media/Data/Temple/Temple_Tracula/31313422_10944/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/xfms/diff2mni.bbr.mat --init /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Linux kate.ad.wcas.northwestern.edu 2.6.32-504.12.2.el6.x86_64 #1 SMP Sun Feb 1 12:14:02 EST 2015 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Fri Dec 4 16:39:05 CST 2015 New invocation of trac-all Fri Dec 4 16:42:16 CST 2015 /media/Data/Temple/Temple_Tracula /usr/local/freesurfer/bin/trac-all -path -s 31313422_10944 -c 31313422_10944/31313422_10944.dmrirc Subject 31313422_10944 SUBJECTS_DIR /media/Data/Temple/Temple_Tracula FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-504.12.2.el6.x86_64 #1 SMP Sun Feb 1 12:14:02 EST 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 126966 total used free shared buffers cached Mem: 16275144 14516852 1758292 8364 779668 10245992 -/+ buffers/cache: 3491192 12783952 Swap: 8208380 311580 7896800 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:42:16-GMT BuildTimeStamp: Aug 16 2014 05:13:24 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:42:16-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:42:16-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:42:16-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:42:16-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:42:16-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:42:16-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /projects/p20394/software/freesurfer-v5.3.0 New invocation of trac-paths root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-504.12.2.el6.x86_64 #1 SMP Sun Feb 1 12:14:02 EST 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 126966 total used free shared buffers cached Mem: 16275144 14696408 1578736 8364 779672 10246520 -/+ buffers/cache: 3670216 12604928 Swap: 8208380 311580 7896800 #------------------------------------- /usr/local/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Fri Dec 4 16:42:17 CST 2015 rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/bin/dmri_paths --outdir /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr --dwi /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/dwi.nii.gz --grad /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvecs --bval /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvals --mask /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /media/Data/Temple/Temple_Tracula/31313422_10944/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/xfms/diff2mni.bbr.mat --init /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt 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/media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all 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/media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Linux kate.ad.wcas.northwestern.edu 2.6.32-504.12.2.el6.x86_64 #1 SMP Sun Feb 1 12:14:02 EST 2015 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Fri Dec 4 16:42:18 CST 2015 New invocation of trac-all Fri Dec 4 16:44:25 CST 2015 /media/Data/Temple/Temple_Tracula /usr/local/freesurfer/bin/trac-all -bedp -s 31313422_10944 -c 31313422_10944/31313422_10944.dmrirc Subject 31313422_10944 SUBJECTS_DIR /media/Data/Temple/Temple_Tracula FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-504.12.2.el6.x86_64 #1 SMP Sun Feb 1 12:14:02 EST 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 126966 total used free shared buffers cached Mem: 16275144 14935120 1340024 8364 780396 10412316 -/+ buffers/cache: 3742408 12532736 Swap: 8208380 311572 7896808 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:44:25-GMT BuildTimeStamp: Aug 16 2014 05:13:24 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:44:25-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:44:25-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:44:25-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:44:25-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:44:25-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/04-22:44:25-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-504.12.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /projects/p20394/software/freesurfer-v5.3.0 WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /media/Data/Temple/Temple_Tracula/31313422_10944/dmri subjectdir is /media/Data/Temple/Temple_Tracula/31313422_10944/dmri Making bedpostx directory structure Queuing preprocessing stages Queuing parallel processing stage 0 slices processed 3 slices processed 6 slices processed 8 slices processed 10 slices processed 11 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 42 slices processed 43 slices processed 44 slices processed 46 slices processed 48 slices processed 51 slices processed Queuing post processing stage New invocation of trac-all Tue Dec 15 17:18:31 CST 2015 /media/Data/Temple/Temple_Tracula/31313422_10944 /usr/local/freesurfer/bin/trac-all -bedp -s 31313422_10944 -c 31313422_10944.dmrirc Subject 31313422_10944 SUBJECTS_DIR /media/Data/Temple/Temple_Tracula FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63462 total used free shared buffers cached Mem: 16275020 15796208 478812 4380 379268 6784284 -/+ buffers/cache: 8632656 7642364 Swap: 8208380 13120 8195260 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/15-23:18:31-GMT BuildTimeStamp: Aug 16 2014 05:13:24 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/15-23:18:31-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/15-23:18:31-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/15-23:18:31-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/15-23:18:31-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/15-23:18:31-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/15-23:18:31-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /projects/p20394/software/freesurfer-v5.3.0 WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /media/Data/Temple/Temple_Tracula/31313422_10944/dmri subjectdir is /media/Data/Temple/Temple_Tracula/31313422_10944/dmri Making bedpostx directory structure Queuing preprocessing stages Queuing parallel processing stage New invocation of trac-all Mon Dec 21 16:03:56 CST 2015 /media/Data/Temple/Temple_Tracula /usr/local/freesurfer/bin/trac-all -path -s 31313422_10944 -c /media/Data/Temple/Temple_Tracula/31313422_10944/31313422_10944.dmrirc Subject 31313422_10944 SUBJECTS_DIR /media/Data/Temple/Temple_Tracula FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63462 total used free shared buffers cached Mem: 16275020 16121924 153096 7172 908504 9983136 -/+ buffers/cache: 5230284 11044736 Swap: 8208380 130768 8077612 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:03:56-GMT BuildTimeStamp: Aug 16 2014 05:13:24 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:03:56-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:03:56-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:03:56-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:03:56-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:03:56-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:03:56-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /projects/p20394/software/freesurfer-v5.3.0 New invocation of trac-paths root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63462 total used free shared buffers cached Mem: 16275020 16112564 162456 7172 908516 9971472 -/+ buffers/cache: 5232576 11042444 Swap: 8208380 130768 8077612 #------------------------------------- /usr/local/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Mon Dec 21 16:03:57 CST 2015 rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/bin/dmri_paths --outdir /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr --dwi /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/dwi.nii.gz --grad /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvecs --bval /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvals --mask /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /media/Data/Temple/Temple_Tracula/31313422_10944/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/xfms/diff2mni.bbr.mat --init /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Mon Dec 21 16:03:58 CST 2015 New invocation of trac-all Mon Dec 21 16:05:02 CST 2015 /media/Data/Temple/Temple_Tracula /usr/local/freesurfer/bin/trac-all -path -s 31313422_10944 -c 31313422_10944/31313422_10944.dmrirc Subject 31313422_10944 SUBJECTS_DIR /media/Data/Temple/Temple_Tracula FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63462 total used free shared buffers cached Mem: 16275020 16054164 220856 7172 909148 9760664 -/+ buffers/cache: 5384352 10890668 Swap: 8208380 130768 8077612 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:05:02-GMT BuildTimeStamp: Aug 16 2014 05:13:24 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:05:02-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:05:02-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:05:02-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:05:02-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:05:02-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:05:02-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /projects/p20394/software/freesurfer-v5.3.0 New invocation of trac-paths root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63462 total used free shared buffers cached Mem: 16275020 16106008 169012 7172 909212 9784180 -/+ buffers/cache: 5412616 10862404 Swap: 8208380 130768 8077612 #------------------------------------- /usr/local/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Mon Dec 21 16:05:03 CST 2015 rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/bin/dmri_paths --outdir /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr --dwi /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/dwi.nii.gz --grad /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvecs --bval /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvals --mask /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /media/Data/Temple/Temple_Tracula/31313422_10944/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/xfms/diff2mni.bbr.mat --init /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Mon Dec 21 16:05:04 CST 2015 New invocation of trac-all Mon Dec 21 16:06:04 CST 2015 /media/Data/Temple/Temple_Tracula /usr/local/freesurfer/bin/trac-all -path -s 31313422_10944 -c 31313422_10944/31313422_10944.dmrirc Subject 31313422_10944 SUBJECTS_DIR /media/Data/Temple/Temple_Tracula FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63462 total used free shared buffers cached Mem: 16275020 16111876 163144 7172 909568 9705348 -/+ buffers/cache: 5496960 10778060 Swap: 8208380 130768 8077612 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:04-GMT BuildTimeStamp: Aug 16 2014 05:13:24 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:04-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:04-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:04-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:04-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:04-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:04-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /projects/p20394/software/freesurfer-v5.3.0 New invocation of trac-paths root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63462 total used free shared buffers cached Mem: 16275020 16106792 168228 7172 909580 9703084 -/+ buffers/cache: 5494128 10780892 Swap: 8208380 130768 8077612 #------------------------------------- /usr/local/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Mon Dec 21 16:06:05 CST 2015 rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/bin/dmri_paths --outdir /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cst_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ilf_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.unc_AS_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fmajor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/fminor_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.atr_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.ccg_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.cab_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slfp_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/lh.slft_PP_avg33_mni_bbr /media/Data/Temple/Temple_Tracula/31313422_10944/dpath/rh.slft_PP_avg33_mni_bbr --dwi /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/dwi.nii.gz --grad /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvecs --bval /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/bvals --mask /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /media/Data/Temple/Temple_Tracula/31313422_10944/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /media/Data/Temple/Temple_Tracula/31313422_10944/dmri/xfms/diff2mni.bbr.mat --init /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /media/Data/Temple/Temple_Tracula/31313422_10944/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Mon Dec 21 16:06:06 CST 2015 New invocation of trac-all Mon Dec 21 16:06:15 CST 2015 /media/Data/Temple/Temple_Tracula /usr/local/freesurfer/bin/trac-all -bedp -s 31313422_10944 -c 31313422_10944/31313422_10944.dmrirc Subject 31313422_10944 SUBJECTS_DIR /media/Data/Temple/Temple_Tracula FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 root kate.ad.wcas.northwestern.edu Linux kate.ad.wcas.northwestern.edu 2.6.32-573.8.1.el6.x86_64 #1 SMP Fri Sep 25 19:24:22 EDT 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63462 total used free shared buffers cached Mem: 16275020 16013988 261032 7172 909588 9614956 -/+ buffers/cache: 5489444 10785576 Swap: 8208380 130768 8077612 ######################################## Program versions: $Id: trac-all,v 1.56 2014/05/26 08:28:32 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:15-GMT BuildTimeStamp: Aug 16 2014 05:13:24 CVS: $Id: mri_convert.c,v 1.213 2014/07/29 19:22:31 fischl Exp $ User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.3 2013/03/25 18:04:53 greve Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:15-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:15-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:15-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:15-GMT BuildTimeStamp: Feb 2 2013 22:46:06 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:15-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2015/12/21-22:06:15-GMT BuildTimeStamp: May 23 2014 05:15:35 CVS: User: root Machine: kate.ad.wcas.northwestern.edu Platform: Linux PlatformVersion: 2.6.32-573.8.1.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer Previous: /projects/p20394/software/freesurfer-v5.3.0 WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /media/Data/Temple/Temple_Tracula/31313422_10944/dmri subjectdir is /media/Data/Temple/Temple_Tracula/31313422_10944/dmri Making bedpostx directory structure Queuing preprocessing stages Queuing parallel processing stage 0 slices processed 3 slices processed 6 slices processed 8 slices processed 10 slices processed 12 slices processed