Hi Rosalia

if you tar and gzip the entire subject folder of one of the problematic
subjects and put it on our ftp site we will take a  look.

Alternatively, you can take a look at this tutorial:

https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview

which should help you correct the problem

cheers
Bruce


On
Tue, 27 Nov
2018, Rosalia Dacosta Aguayo wrote:

>
>         External Email - Use Caution        
>
> Dear Free Surfer experts,
>
> I have run recon-all for all my participants and I am editing the brainmask and making control
> points. I have seen that for two participants, Free Surfer were not run. I run those two participant
> again and I saw that they were stuck in the vertex correction, more than 30.000. I do not know how
> to cope with this problem and I would greatly appreciate any help with this.
> Would it be possible to upload these two subjects so you can inspect them and tell me what is
> happening with them?
>
> Best wishes,
> Rosalia
>
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