Freesurfers --
Here's the output of my terminal...
kerryave:functionals $ cd /cluster/kuperberg/SemPrMM/MRI/functionals/
kerryave:functionals $ rm /cluster/kuperberg/SemPrMM/MRI/functionals/ya24/scripts/atlloc_fs-stats.log
kerryave:functionals $ selxavg3-sess -analysis ya.ATLLoc.spm.sm8.lh -s ya24 -d /cluster/kuperberg/SemPrMM/MRI/functionals/ -svres -nolog
Surface data fsaverage lh
--------------------------------------------------------------
selxavg3-sess logfile is /dev/null
--------------------------------------------------------------
-------------------------------------------
/autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24
Fri Apr 8 16:47:17 EDT 2011
anadir = /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/ya.ATLLoc.spm.sm8.lh
ERROR: cannot find /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz
kerryave:functionals $ ls -l ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz
-rw-rw-r-- 1 sburns lingua 83660305 Apr 7 07:56 ya24/ATLLoc/007/fmcpr.odd.sm8.fsaverage.lh.nii.gz
Does anyone know what's going on? Here's my
analysis.info for that analysis...
kerryave:functionals $ cd ya.ATLLoc.spm.sm8.lh/
# FSBUILD freesurfer-Linux-centos4_x86_64-stable-v5.0.0-20110319
# MKAVERSION $Id: mkanalysis-sess,v 1.49.2.8 2011/01/18 17:08:22 greve Exp $
# MKACMD /usr/local/freesurfer/stable5_0_0/fsfast/bin/mkanalysis-sess -analysis ya.ATLLoc.spm.sm8.lh -fsd ATLLoc -rlf rlf -p atlloc.par -spmhrf 0 -refeventdur 2 -event-related -TR 2 -nconditions 4 -mcextreg -hpf 128 -funcstem fmcpr.odd.sm8.fsaverage.lh.nii.gz -surface fsaverage lh -force
# DATE Fri Apr 8 08:31:01 EDT 2011
analysis ya.ATLLoc.spm.sm8.lh
mcstem fmcpr
funcstem fmcpr.odd.sm8.fsaverage.lh.nii.gz
fsd ATLLoc
runlistfile rlf
TR 2
RegDOF 6
RawSpace surface fsaverage lh
mask brain
RawFWHM 0
RawSTC none
inorm 100
acfbins 30
fixacf 1
acffwhm 20
acfsvd 0
designtype event-related
nskip 0
polyfit 2
HPFCutoffHz 128
nconditions 4
parname atlloc.par
RefEventDur 2
timewindow 40.000000
prestim 0
TER 0.050000
spmhrf 0
stimulusdelay 0
Condition 1 Condition01
Condition 2 Condition02
Condition 3 Condition03
Condition 4 Condition04
nuisreg mcprextreg 3
Thanks for the help.
Scott Burns
Kuperberg Lab
Martinos Center for Biomedical Imaging
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