Hi experts,

We are doing the segmentation of the subfields of the hippocampal and amygdala subfields, brainstem subestructures and thalamic nuclei. When we used segmentHA_T1.sh and segmentThalamicNuclei.sh, 'Command not found' appears. 

On the other hand, we used segmentBS.sh and we got the following message: 

'Software requires 4 arguments:

segmentSFnewT1.sh matlabRuntimeDirectory FShomeDirectory subjectName subjectDir'.

But, when we typed 'segmentSFnewT1.sh'  we got  'Command not found' again.

Note:  We have FS v6.0 and the runtime Matlab 2014b.

best wishes,

Marina