/home/gc/study/recon-all/400614dclass/mri /usr/local/freesurfer/bin/talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm --atlas 3T18yoSchwartzReactN32_as_orig $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ Linux lugh.fisica.uniud.it 2.6.32-642.4.2.el6.x86_64 #1 SMP Tue Aug 23 11:15:56 CDT 2016 x86_64 x86_64 x86_64 GNU/Linux Thu Sep 7 11:46:26 CEST 2017 mri_convert.bin orig_nu.mgz talsrcimg.img $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig_nu.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 1.86265e-09, -7.45058e-09) j_ras = (-1.49012e-08, -2.67755e-09, -1) k_ras = (-1.86265e-09, 1, -3.14321e-09) writing to talsrcimg.img... Analyze Output Matrix -1.00000 -0.00000 -0.00000 131.52509; 0.00000 -0.00000 1.00000 -108.15221; -0.00000 -1.00000 -0.00000 125.69550; 0.00000 0.00000 0.00000 1.00000; -------------------- INFO: set hdr.hist.orient to -1 mpr2mni305 talsrcimg Thu Sep 7 11:46:26 CEST 2017 /usr/local/freesurfer/bin/mpr2mni305 talsrcimg $Id: mpr2mni305,v 1.5 2015/12/18 23:56:21 zkaufman Exp $ target=3T18yoSchwartzReactN32_as_orig --------------------------------------------------------------------- analyzeto4dfp talsrcimg -O0 -y --------------------------------------------------------------------- $Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ Thu Sep 7 11:46:27 2017 Writing: talsrcimg.4dfp.hdr $Id: analyzeto4dfp.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ Reading: talsrcimg.hdr header size 348 bytes hdr.dime.datatype offset=70 value=2 hdr.dime.bitpix offset=72 value=8 hdr.hist.orient offset=252 value=-1 dimensionality 4 dimensions 256 256 256 1 Reading: talsrcimg.img Writing: talsrcimg.4dfp.img Writing: talsrcimg.4dfp.ifh ifh2hdr talsrcimg -r0to255 ori=2 --------------------------------------------------------------------- gauss_4dfp talsrcimg 1.1 --------------------------------------------------------------------- $Id: gauss_4dfp.c,v 1.3 2009/05/15 21:43:46 nicks Exp $ Reading: talsrcimg.4dfp.img Writing: talsrcimg_g11.4dfp.img image dimensions 256 256 256 padded to 288 288 288 processing volume 1$Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ Thu Sep 7 11:46:34 2017 Writing: talsrcimg_g11.4dfp.hdr Writing: talsrcimg_g11.4dfp.ifh including: talsrcimg.4dfp.img.rec in talsrcimg_g11.4dfp.img.rec --------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig none talsrcimg_g11 none talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4 4355 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 --------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4 4355 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 --------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4 1283 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 --------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4 3335 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 --------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4 2311 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 --------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask talsrcimg_g11 none talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4 2311 --------------------------------------------------------------------- $Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading mask: /usr/local/freesurfer/average/711-2B_as_mni_average_305_mask.4dfp.img (2306576 pixels) talsrcimg_g11.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: talsrcimg_g11.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 --------------------------------------------------------------------- compute_vox2vox talsrcimg talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4 /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig --------------------------------------------------------------------- $Id: compute_vox2vox.c,v 1.3 2010/02/27 01:41:53 nicks Exp $ Reading: talsrcimg.4dfp.ifh Reading: talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4 Reading: /usr/local/freesurfer/average/3T18yoSchwartzReactN32_as_orig.4dfp.ifh Writing: talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4_vox2vox.txt start time Thu Sep 7 11:46:26 CEST 2017 end time Thu Sep 7 11:46:59 CEST 2017 mpr2mni305 success avi2talxfm orig_nu.mgz /usr/local/freesurfer/average/mni305.cor.mgz talsrcimg_to_3T18yoSchwartzReactN32_as_orig_t4_vox2vox.txt transforms/talairach.auto.xfm avi2talxfm done lta_convert --src orig_nu.mgz --trg /usr/local/freesurfer/average/mni305.cor.mgz --inxfm transforms/talairach.auto.xfm --outlta transforms/talairach.auto.xfm.lta --subject fsaverage $Id: lta_convert.cpp,v 1.9.2.1 2016/08/09 02:33:22 zkaufman Exp $ --src: orig_nu.mgz src image (geometry). --trg: /usr/local/freesurfer/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.auto.xfm input MNI/XFM transform. --outlta: transforms/talairach.auto.xfm.lta output LTA. --s: fsaverage subject name LTA read, type : 1 1.09177 -0.02783 -0.10195 -1.30971; 0.04673 0.97076 0.20972 -27.93497; 0.07529 -0.17263 1.10550 -15.31982; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.auto.xfm.lta... lta_convert successful. Started at Thu Sep 7 11:46:26 CEST 2017 Ended at Thu Sep 7 11:46:59 CEST 2017 talairach_avi done