This posting indicates that changing the path to ./stats from ../stats got rid of a segmentation fault. I would at least check that all paths in the arguments ro mris_anatomical_stats are correct though.

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg10245.html

But I don’t see the error in the recon -all log you sent which is apparently from May 2020 showing Freesurfer 6.0.0 is being run on RedHat Enterprise Linux 7.5.

- R.

On Jul 10, 2025, at 16:24, Samantha Hendry <shendry2@ed.ac.uk> wrote:

mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab FMS_0094 lh white