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Dear Freesurfer experts,
I performed group analysis in QDEC in order to compare cortical thickness between two groups using the Monte Carlo Z simulation correction. My question is, where is located the z-score of each significant cluster? Maybe in the second column named as Max?. Below you can find an example. In this case z-scores of the precuneus and the inferior parietal would be 3.422 and 3.926 respectively?
Input /usr/local/freesurfer/subjects/qdec/Untitled/lh-Diff-HC-ad_plus-Intercept-thickness/sig.mgh
# Frame Number 0
# srcsubj fsaverage
# hemi lh
# surface white
# group_avg_surface_area 82220
# group_avg_vtxarea_loaded 1
# annot aparc
# SUBJECTS_DIR /usr/local/freesurfer/subjects
# SearchSpace_mm2 75146
# SearchSpace_vtx 146493
# Bonferroni 0
# Minimum Threshold 2.3
# Maximum Threshold infinity
# Threshold Sign abs
# AdjustThreshWhenOneTail 1
# CW PValue Threshold: 0.05
# Area Threshold 0 mm^2
# CSD thresh 2.300000
# CSD nreps 10000
# CSD simtype null-z
# CSD contrast NA
# CSD confint 90.000000
# Overall max 4.16102 at vertex 61133
# Overall min -1.24867 at vertex 155746
# NClusters 2
# FixMNI = 1
#
# ClusterNo Max VtxMax Size(mm^2) TalX TalY TalZ CWP CWPLow CWPHi NVtxs WghtVtx Annot
1 3.422 78695 820.44 -11.2 -54.8 49.4 0.00250 0.00190 0.00310 1664 4553.35 precuneus
2 3.926 52042 733.99 -30.8 -66.6 40.7 0.00410 0.00330 0.00490 1190 3620.13 inferiorparietal
Simulation complete.
Thanks in advance.
Best regards,
Steve.
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