Hi Trisanna
you can give the transformation "file" named identity.nofile and it will assume that the transform is the identity. You can then use mri_vol2label to sample the label onto the surface and visualize it with:
freeview -f lh.inflated:label=lh.labels.label
or some such
cheers
Bruce
On Thu, 14 Apr 2016, Trisanna Sprung-Much wrote:
Hi there
Just to reiterate my point above, when I open a surface created in
Freesurfer with my labels.mgz (converted from minc) in Freeview (i.e. no
transformations have been performed) I get the following snapshot
#1. Clearly, my original labels are aligned with the surface, as they should
be since Freesurfer did not alter the space. So, how can I use mrivol2surf
to resample the surface such that the vertices carry the label info? What
output format should I use in mrivol2surf? How can I open this output in
Freeview?
For instance, when I try a .dat that creates no transformation and save the
output as .mgz and use Overlay in Freeview, I get snapshot #2. So, something
is going wrong in my mrivol2surf command.
My apologies for the questions
Trisanna
--
Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
On Thu, Apr 14, 2016 at 12:08 PM, Trisanna Sprung-Much
<trisanna.sprung-much@mail.mcgill.ca> wrote:
will try this, thanks.
In the meantime
After doing some thinking about the command, I am now confused about
why I need to generate a .dat in the first place. here is my thinking:
my labels and my icbm volumes are either registered to MNI305 or
MNI152 template - i.e. when I painted my voxels to generate my labels,
the volumes were already registered to either of these templates when
using an in-house software.
So, why do I want to do ANOTHER registration of mni152reg to generate
a .dat file that is then needed for mri_vol2surf? Why can't I simply
create my surfaces in Freesurfer and then overlay my labels onto those
surfaces if, as I have found online, Freesurfer does not change the
space of the input volumes? My understanding is that it calculates an
MNI305 transformation but does not alter the actual input space.
Therefore, I do not want to do any further transformations since my
labels and volumes are already in sync. If mri_vol2surf really needs a
.dat to run, shouldn't I be creating a registration matrix that does
absolutely nothing to ensure my labels don't change?
Some clarification would be greatly appreciated!
--
Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
On Thu, Apr 14, 2016 at 11:33 AM, Douglas N Greve
<greve@nmr.mgh.harvard.edu> wrote:
Sorry, that is something we put in for version 6 to be
able to run under
newer versions of mac. Edit the file and remove the
following line
source $FREESURFER_HOME/sources.csh
On 04/14/2016 10:31 AM, Trisanna Sprung-Much wrote:
> thanks, Doug. *Unfortunately, I got a different error
this time:*
>
> trisanna@kaplan:~$ mni152reg --s icbm-102
> /usr/local/freesurfer-5.3//sources.csh: No such file or
directory.
>
>
> What does this mean?
>
> After doing some thinking about the command, *I am now
confused about
> why I need to generate a .dat in the first place. here
is my thinking:*
>
> my labels and my icbm volumes are either registered to
MNI305 or
> MNI152 template - i.e. when I painted my voxels to
generate my labels,
> the volumes were already registered to either of these
templates when
> using an in-house software.
>
> So, why do I want to do ANOTHER registration of
mni152reg to generate
> a .dat file that is then needed for mri_vol2surf? Why
can't I simply
> create my surfaces in Freesurfer and then overlay my
labels onto those
> surfaces if, as I have found online,*Freesurfer does not
change the
> space of the input volumes?* My understanding is that it
calculates an
> MNI305 transformation but does not alter the actual
input space.
> Therefore, I do not want to do any further
transformations since my
> labels and volumes are already in sync. If mri_vol2surf
really needs a
> .dat to run, *shouldn't I be creating a registration
matrix that does
> absolutely nothing to ensure my labels don't change?
> *
> Some clarification would be greatly appreciated!
>
> Trisanna
>
> --
> Ph.D. Candidate
> McGill University
> Integrated Program in Neuroscience
> Psychology
>
>
> On Wed, Apr 13, 2016 at 5:06 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
>
> this is a known bug. Try this version instead
>
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mni152reg
>
> On 04/13/2016 01:06 PM, Trisanna Sprung-Much wrote:
> > Hi Doug
> >
> > So I tried running mni152reg and had the following
error:
> >
> > mni152reg --s icbm-102_test
> >
> >
> > setenv SUBJECTS_DIR /data-01/trisanna/freesurfer
> > cd /home/trisanna
> > /usr/local/freesurfer-5.3//bin/mni152reg --s
icbm-102_test
> >
> >
> > fslregister --mov
> >
/usr/share/fsl/5.0/data/standard/MNI152_T1_2mm_brain.nii.gz
--s
> > icbm-102_test --reg
> >
> /data-01/trisanna/freesurfer/icbm-102_test/mri/transforms/reg.mni152.2mm.d
at
> > --dof 12
> > mkdir: cannot create directory
> >
‘/usr/share/fsl/5.0/data/standard/tmp.fslregister.11061’:
Permission
> > denied
> >
> > I spoke with our IT guy and he says that of course
I cannot be
> writing
> > to fsl/5.0/data. I then did a web search and found
that someone else
> > was having this problem
> >
> >
>
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg41276.html
> >
> > How might I fix this? Let me know if I should send
the log file that
> > was created.
> >
> > best
> >
> > Trisanna
> >
> >
> > --
> > Ph.D. Candidate
> > McGill University
> > Integrated Program in Neuroscience
> > Psychology
> >
> >
> > On Fri, Apr 8, 2016 at 1:33 PM, Douglas N Greve
> > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
> >
> > not sure, mni152reg uses
> $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz
> >
> > You can always just run the following command
directly
> >
> > fslregister --mov icbm.nii.gz --s $subject --reg
> > $SUBJECTS_DIR/subject/transforms/icbm.reg.dat --dof
12
> > --lta
$SUBJECTS_DIR/subject/transforms/icbm.reg.lta
> >
> > This will use a linear (12 dof) registration which
might not be
> > particularly accurate
> >
> >
> > On 04/08/2016 01:27 PM, Trisanna Sprung-Much wrote:
> > > thanks, Doug. I'll get started on running all
brains using
> > recon-all.
> > >
> > > The MNI has several ICBM templates now:
> > >
> > > ICBM152 linear
> > > ICBM152 nonlinear symmetric VI
> > > ICBM152 nonlinear 2009
> > >
> > > Do you know which one mni152reg is using?
> > >
> > > Trisanna
> > >
> > > --
> > > Ph.D. Candidate
> > > McGill University
> > > Integrated Program in Neuroscience
> > > Psychology
> > >
> > >
> > > On Fri, Apr 8, 2016 at 12:47 PM, Douglas N Greve
> > > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
> > >
> > >
> > >
> > > On 04/07/2016 03:50 PM, Trisanna Sprung-Much
wrote:
> > > > thanks, Doug. I am still extremely confused,
> however. *Am
> > I meant to
> > > > run recon-all first? *I was told in a
previous email
> that I
> > > should do
> > > > this first, however, I thought that
Freesurfer takes the
> > volumes and
> > > > does a linear registration to MNI305
template, which
> would
> > not work
> > > > for my scans that are linearly registered to
ICBM152
> > nonlinear 2006
> > > > template...
> > > run recon-all first, otherwise you won't have
surfaces.
> > recon-all
> > > computes the transform matrix to the mni305
but keeps all
> > the data in
> > > the native anatomical space. I think the
ICBM152 is
> the same
> > as the
> > > MNI152. Is that right? If so, you can use
mni152reg to
> > compute the
> > > registration to 152 space. If not, then we'll
have to
> workout
> > > something
> > > else.
> > > >
> > > > When you have a moment, could you please
outline in
> a step
> > by step
> > > > manner the steps I should run to take my
labels.mnc
> and my
> > volumes
> > > > such that I can generate surfaces for those
50 volumes,
> > overlay the
> > > > labels (for which I thought I was using
> mri_vol2surf) and
> > then edit
> > > > those labels to make them more accurate?
> > > so you want to transfer the labels from
labels.mnc to the
> > surfaces of
> > > your individual 50 subjects? Start by running
recon-all on
> > the 50.
> > > > *The idea is that I want to generate some
sulcal
> > probability maps
> > > > using surface-based registration, as I can
already
> generate
> > > > probability maps using volumetric
registration quite
> easily.*
> > > >
> > > > many thanks
> > > >
> > > > Trisanna
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > --
> > > > Ph.D. Candidate
> > > > McGill University
> > > > Integrated Program in Neuroscience
> > > > Psychology
> > > >
> > > >
> > > > On Wed, Apr 6, 2016 at 2:43 PM, Douglas
Greve
> > > > <greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> > > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
> > > >
> > > > For the 152, you can run mni152reg --s
subject, then
> > specify
> > > >
$SUBJECTS_DIR/subject/mri/transform/mni152reg.dat (or
> > .lta) for
> > > > the argument to --reg. I'll need to
figure out
> how to
> > generate a
> > > > .dat/.lta for the 305.
> > > >
> > > >
> > > >
> > > > On 4/6/16 12:50 PM, Trisanna Sprung-Much
wrote:
> > > >> Any ideas?
> > > >>
> > > >> Trisanna
> > > >>
> > > >> --
> > > >> Ph.D. Candidate
> > > >> McGill University
> > > >> Integrated Program in Neuroscience
> > > >> Psychology
> > > >>
> > > >>
> > > >> On Tue, Apr 5, 2016 at 9:37 PM,
Trisanna
> Sprung-Much
> > > >> <trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>
> > <mailto:trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>>
> > > <mailto:trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>
> > <mailto:trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>>>
> > > >>
<mailto:trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>
> > <mailto:trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>>
> > > <mailto:trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>
> > <mailto:trisanna.sprung-much@mail.mcgill.ca
> <mailto:trisanna.sprung-much@mail.mcgill.ca>>>>> wrote:
> > > >>
> > > >> Hi Dr. Fischl
> > > >>
> > > >> I have a mixture - some of the
labels were
> > painted in the
> > > >> MNI305 space (older ones) and the
more recent
> > ones are
> > > >> registered to the ICBM152 nonlinear
> symmetric VI
> > (2006)
> > > template.
> > > >>
> > > >> Best
> > > >>
> > > >> Trisanna
> > > >>
> > > >> --
> > > >> Ph.D. Candidate
> > > >> McGill University
> > > >> Integrated Program in Neuroscience
> > > >> Psychology
> > > >>
> > > >>
> > > >> On Tue, Apr 5, 2016 at 6:34 PM,
Bruce Fischl
> > > >> <fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> > <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
> > > <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> > <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>
> > > >> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> > <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
> > > <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> > <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>>> wrote:
> > > >>
> > > >> Hi Trisanna
> > > >>
> > > >> what space are your labels in?
> > > >>
> > > >> cheers
> > > >> Bruce
> > > >> On Tue, 5 Apr 2016, Trisanna
Sprung-Much
> > > >> wrote:
> > > >>
> > > >> > Hi Freesurfer
> > > >> >
> > > >> > I have some labels (.mnc)
that are
> painted
> > voxels
> > > >> generated from a Montreal
> > > >> > Neurological Institute
software. I am
> trying to
> > > project
> > > >> the labels onto the
> > > >> > surfaces generated from
recon-all that I
> > applied
> > > to the
> > > >> corresponding MRI
> > > >> > volumes.
> > > >> >
> > > >> > I used mri_vol2surf:
> > > >> >
> > > >> > mri_vol2surf --src labels.mnc
--out
> > test.mgz --srcreg
> > > >> talairach.auto.xfm
> > > >> > --hemi lh
> > > >> >
> > > >> > and got the following error:
> > > >> >
> > > >> > Error reading inplaneres from
> > talairach.auto.xfm
> > > >> >
> > > >> >
> > > >> > Do I need a .dat file? If so,
how can I
> > attain it?
> > > >> Essentially, what is the
> > > >> > registration file that I am
supposed
> to be
> > using?
> > > >> >
> > > >> > Many thanks!
> > > >> >
> > > >> > Trisanna
> > > >> >
> > > >> > --
> > > >> > Ph.D. CandidateMcGill
University
> > > >> > Integrated Program in
Neuroscience
> > > >> > Psychology
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >>
_______________________________________________
> > > >> Freesurfer mailing list
> > > >> Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > >>
<mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> > >
>
>>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > >>
> > > >>
> > > >> The information in this e-mail
is intended
> > only for the
> > > >> person to whom it is
> > > >> addressed. If you believe this
> was sent to
> > > you in
> > > >> error and the e-mail
> > > >> contains patient information,
please
> contact the
> > > Partners
> > > >> Compliance HelpLine at
> > > >> http://www.partners.org/complianceline . If
the e-mail
> > > >> was sent to you in error
> > > >> but does not contain patient
> information, please
> > > contact
> > > >> the sender and properly
> > > >> dispose of the e-mail.
> > > >>
> > > >>
> > > >>
> > > >>
> > > >>
> > > >>
_______________________________________________
> > > >> Freesurfer mailing list
> > > >> Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > >> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> > >
>
>>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > >
> > > >
> > > >
_______________________________________________
> > > > Freesurfer mailing list
> > > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
> > >
>
>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > >
> > > >
> > > > The information in this e-mail is
intended only
> for the
> > > person to
> > > > whom it is
> > > > addressed. If you believe this e-mail
was sent
> to you in
> > > error and
> > > > the e-mail
> > > > contains patient information, please
contact the
> Partners
> > > > Compliance HelpLine at
> > > > http://www.partners.org/complianceline . If
the
> e-mail was
> > sent to
> > > > you in error
> > > > but does not contain patient
information, please
> > contact the
> > > > sender and properly
> > > > dispose of the e-mail.
> > > >
> > > >
> > > >
> > > >
> > > >
_______________________________________________
> > > > Freesurfer mailing list
> > > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > > >
>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >
> > > --
> > > Douglas N. Greve, Ph.D.
> > > MGH-NMR Center
> > > greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> > <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
> > > Phone Number:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>
> > <tel:617-724-2358 <tel:617-724-2358>
<tel:617-724-2358
> <tel:617-724-2358>>>
> > > Fax: 617-726-7422 <tel:617-726-7422>
<tel:617-726-7422
> <tel:617-726-7422>> <tel:617-726-7422 <tel:617-726-7422>
> > <tel:617-726-7422 <tel:617-726-7422>>>
> > >
> > > Bugs:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > >
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > > FileDrop:
https://gate.nmr.mgh.harvard.edu/filedrop2
> > >
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > >
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > > Outgoing:
> > >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> > >
> > > _______________________________________________
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> >
>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >
> > >
> > >
> > >
> > > _______________________________________________
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> > <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> > >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> > --
> > Douglas N. Greve, Ph.D.
> > MGH-NMR Center
> > greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> > Phone Number: 617-724-2358 <tel:617-724-2358>
> <tel:617-724-2358 <tel:617-724-2358>>
> > Fax: 617-726-7422 <tel:617-726-7422>
<tel:617-726-7422
> <tel:617-726-7422>>
> >
> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> >
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> >
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > Outgoing:
> >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> <mailto:Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> Outgoing:
>
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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