just posted solution to the freesurfer list. Are you running your analysis local to the martinos center?

On 10/11/2019 11:02 AM, Droppa, Kyle Salmon wrote:
Hello,

I posted this earlier and wasn't able to get a response. I am using freesurfer version 6 and I am having an issue with changing the degrees of freedom when I run preproc-sess. I  made some registrations that are 9 and 12 dof instead of the default 6 using bbregister, however when I try to run preproc-sess, it pulls the dof6 files instead.

Is there a flag I can use that makes preproc use the register.dof9.lta and register.dof12.lta files instead?

Thank you and have a nice day!