Hi Jenifer

Although this paper (Cortical thickness reduction of normal appearing cortex in patients with polymicrogyria) is about Polymicrogyria we had plenty of cases of heterotopias and other malformations of cortical development in our pool of analyzed data.

Our experience tell that the algorithm is pretty robust. Even under severe deformations.

-- PPJ
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Pedro Paulo de M. Oliveira Junior
Diretor de Operações
Netfilter & SpeedComm Telecom
-- For mobile: http://www.netfilter.com.br/mobile




On Mon, Jun 28, 2010 at 17:17, Juranek, Jenifer <Jenifer.Juranek@uth.tmc.edu> wrote:
Excellent.

Many Thanks!
Jenifer

-----Original Message-----
From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu]
Sent: Monday, June 28, 2010 3:16 PM
To: Juranek, Jenifer
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] heterotopias

Hi Jenifer,

what does "handle" mean? You could label them  WM-hypointensities, and I
think the new version should handle them in terms of not doing something
strange in the surface deformation.

cheers
Bruce


On Mon, 28 Jun 2010, Juranek, Jenifer wrote:

> Any suggestions from anyone wrt handling heterotopias?
> Is it best to use a custom labelname to label them as such? Current
labelname="WM-hypointensities".
>
> Cheers,
> Jenifer
>


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