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Hello
I am trying to transform a free surfer segmentation to functional space using reg-feat2anat but I get the error
tkregister2_cmdl_cmdl: Command not found.
I am running freesufer on linux through a virtual machine. See below for the full command and output. Any help would be greatly appreciated.
reg-feat2anat --feat LTFI_FEAT_PE_FB_R1/LTFI_02.feat --subject LTFI_02
FeatDir is LTFI_FEAT_PE_FB_R1/LTFI_02.feat
template volume is LTFI_FEAT_PE_FB_R1/LTFI_02.feat/example_func.nii.gz
log file is LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/reg-feat2anat.log
Thu 26 Mar 17:17:56 GMT 2020
/storage/gold/cinn/2013/neuroade/LTFI_Analysis
/usr/local/freesurfer7/freesurfer/bin/reg-feat2anat
--feat LTFI_FEAT_PE_FB_R1/LTFI_02.feat --subject LTFI_02
Linux neurodebian-1022 4.4.0-165-generic #193-Ubuntu SMP Tue Sep 17 17:42:52 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
example_func ras_good_flag 1
-------------------------------------------------------
Initializing exf2anat with header
tkregister2_cmdl_cmdl --targ /storage/gold/cinn/2013/neuroade/LTFI_Analysis/Freesurfer_output/LTFI_02/mri/brainmask.mgz --mov LTFI_FEAT_PE_FB_R1/LTFI_02.feat/example_func.nii.gz --reg LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/anat2exf.register.dat.init
--fslregout LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/exf2anat.init.fsl.mat --regheader --noedit
tkregister2_cmdl_cmdl: Command not found.
Many Thanks
Tiffany
------------------------------------------------------
Tiffany Bell, PhD
Postdoctoral Associate
Cumming School of Medicine
University of Calgary
Alberta Children’s Hospital
2888 Shaganappi Trail, NW Calgary, AB T3B 6A8
(E)
tiffany.bell@ucalgary.ca
(T) 403-955-2970
www.kidsmigraine.info