setenv SUBJECTS_DIR /Users/corpuscallosum/Desktop/TRACULA/RRD

# Output directory where trac-all results will be saved
# Default: Same as SUBJECTS_DIR
#
set dtroot = /Users/corpuscallosum/Desktop/TRACULA/RRD/R001A

# Subject IDs
#
set subjlist = (R001A)
# Input diffusion DICOMs
# If original DICOMs don't exist, these can be in other image format
# but then the gradient table and b-value table must be specified (see below)
#
set dcmroot = /Users/corpuscallosum/Desktop/TRACULA/RRD/R001A/R001A.dicom/

set dcmlist = (1.2.840.113619.2.475.14196467.3448649.2049.1682210291.210.MR.dcm)

#set bveclist = /Users/corpuscallosum/Desktop/TRACULA/RRD/R001A/R001A/dmri/dwi_orig.1.bvecs

#set bvallist = /Users/corpuscallosum/Desktop/TRACULA/RRD/R001A/R001A/dmri/dwi_orig.1.bvals

set dob0 = 0
set pedir = ( RL )
set epifactor = 65
set echospacing = 0.7
set doeddy = 1
set dorotbvecs = 1
set intrareg = 3
set intradof = 9
set intrarot = 90
set interreg = 5
set intertrg = /Applications/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz
set segname = aparc+aseg
set usethalnuc = 1
set usemaskanat = 1
set doregflt = 0
set doregbbr = 1
set doregmni = 1
set mnitemp = /Users/corpuscallosum/tutorial_data_20190918_1558/fsl_507/data/standard/MNI152_T1_1mm_brain.nii.gz
set doregcvs = 0
set nstick = 2
set nburnin = 200
set nsample = 7500
set nkeep = 5