That sounds pretty weird… Did you get any error messages on the Linux server?

Cheers,

/Eugenio

Juan Eugenio Iglesias

ERC Senior Research Fellow

Centre for Medical Image Computing (CMIC)

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Marcel Heers <marcel.heers@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, 3 October 2018 at 20:11
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] hippocampal subfields error

External Email - Use Caution

Dear Eugenio,

I am currently testing the newest version of your hippocampal subfield analysis script. If I process the data on my macbook the files hipposubfields.lh.T2.v21.file_ID contain the volumes of the different nuclei, but on the linux server these files remain empty. On the server I installed freesurfer as local user. Do you have any suggestions how to check what might go wrong?

Thanks for your help!

Marcel