Dear Experts,

I'm having the same error as this 2023 post that y'all responded to:

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg74833.html

I'm running FreeSurfer 8.0.0 on Ubuntu 22.04.5 LTS, and most of my subjects have run through the whole pipeline with no problems.

You told the original 2023 poster that the 2 timepoint volumes are disorganized, but still usable—which was very helpful, and covers most of my error cases, however two of my errored-out subjects have 3 timepoints. I wanted to check with you in case 3-timepoint volumes wouldn't be usable for some reason?

The following volumes are in base/tmp/hippoSF_T1_long.v22_right/ :

volumesAmygdala_tp_1.txt

volumesAmygdala_tp_2.txt

volumesAmygdala_tp_3.txt

volumesHippo_tp_1.txt

volumesHippo_tp_2.txt

volumesHippo_tp_3.txt

I've attached the logs for both of them, and the final lines of both logs are identical:

Applying LTAtransformInterp (resample_type 0)

writing to discreteLabelsMergedBodyHeadNoMLorGCDGResampledT1_tp_2.mgz...

Transforming points

Wrote image to file image_tp_3.mgz

This file does not contain MRI parameters

Unable to perform assignment because the left and right sides have a different number of elements.

Error in SegmentSubfieldsT1Longitudinal (line 2136)

Thank you!

Robert