Hi Joel,<br><br>recon-all -make all -s &lt;subjid&gt; should work if you are using the latest version.&nbsp; Otherwise you can check which steps were run in the /scripts/recon-all-status.log and rerun them with their individual flags, as listed here:<br>
<a href="https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable">https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable</a><br><br>Jenni<br><br><div class="gmail_quote">On Tue, Apr 8, 2008 at 5:04 PM, joel bruss &lt;<a href="mailto:joel-bruss@uiowa.edu">joel-bruss@uiowa.edu</a>&gt; wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hello-<br><br>I was running recon-all when my machine croaked.&nbsp; I was on the latter-half of day two and I think (hope) that the process was nearing completion.&nbsp; Is there a command to give to FreeSurfer to start back in the pipeline where the process left off or do I have to do each command separately?&nbsp; Specifically, this was the command I used:<br>

<br>recon-all -subjid sub1 -all<br><br>Is there a flag or comment to check/pick up where I left off or am I out of luck?<br><br>Thanks for your help.<br><font color="#888888"><br>-Joel<br>
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Learning and Memory Lab<br>The University of Texas at Austin<br>Department of Psychology<br>1 University Station A8000<br>Austin, TX 78712<br>phone: (512) 471-2727<br>fax: (512) 471-5935 <br>email: <a href="mailto:jpacheco@mail.utexas.edu">jpacheco@mail.utexas.edu</a>