Dear Freesurfer experts,

 

As indicated here https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg02137.html

I am rerunning the code below to creare the file norm.mgz:

mri_em_register -mask brain.mgz -p .5 nu.mgz \

$FREESURFER_HOME/average/RB40_talairach_2005-07-20.gca \

transforms/talairach.lta

 

I got this error:

== Number of threads available to mri_em_register for OpenMP = 1 ==

reading 1 input volumes...

logging results to talairach.log

reading '/opt/freesurfer/6.0/average/RB40_talairach_2005-07-20.gca'...

GCAread(/opt/freesurfer/6.0/average/RB40_talairach_2005-07-20.gca): could not open file

No such file or directory

mri_em_register: could not open GCA /opt/freesurfer/6.0/average/RB40_talairach_2005-07-20.gca.

No such file or directory

 

 

This solution above does not work for me because the file : RB40_talairach_2005-07-20.gca does not exist in /opt/freesurfer/6.0/average

I thought maybe the problem is that the file RB40_talairach_2005-07-20.gca is called now in a different way?

 

Please could you tell me how the file “RB40_talairach_2005-07-20.gca” is called for Freesurfer v 6.0? there are two files in the folder “average” that terminate with .gca: RB_all_2016-05-10.vc700.gca or RB_all_withskull_2016-05-10.vc700.gca

 

Thank you very much in advance

Best regards

Ileana Camerino

 

PhD candidate 

Donders Institute for Brain, Cognition and Behaviour

 

Centre for Cognition

Spinozabuilding

Room B02.25

Montessorilaan 3, 6525 HR Nijmegen

The Netherlands

Tel. +31-24 3612618