Hi Letitia,

Can you send the full command lines that you ran and the output?

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Schneider, Letitia Maria
Sent: Thursday, March 14, 2024 10:43 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_label2vol fillribbon issue

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Hello,

I am using Freesurfer version 7.3.2 on a mac. 

I am using the mri_label2vol function to project an anatomical label into volume space, but I realised the label comes out wrong when I use the --fill-ribbon flag: its orientation changes to RSP. 

The same label comes out right when I use the --fillthresh flag (oriented in RPI). 

Any idea why using --fillribbon changes the orientation?

Thank you in advance.

Best wishes,
Letitia