This bug has been fixed in the dev branch of Freesurfer (FS). You can get the changes in your local copy of FS by either git checkout the python/gems/subregions/core.py file into the appropriate subfolder (<FS_install_dir>/python/gems/subregions) where you installed FS or you could simply edit the core.py file at that location as in the bug fix.

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Markus Handal Sneve <m.h.sneve@psykologi.uio.no>
Sent: Wednesday, September 21, 2022 2:35 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Cc: Nolan, Jackson <JNOLAN5@mgh.harvard.edu>; mdalaminbadal@gmail.com <mdalaminbadal@gmail.com>
Subject: Re: [Freesurfer] segment_subregions failed

External Email - Use Caution

Hi,

Sorry if this ends up in the wrong place, had to reactivate my FS-mailing list account.

So I get the exact same error as reported by Mamun Al-Amin when running segment_subregion (FS v7.3.2).

Fresh terminal, no other FS version running in the background, build-stamp.txt shows the correct version.

Hopefully you can see the screenshot below, sadly cannot ctrl-c text out of our cluster

Thanks!

Markus Handal Sneve, Ph.D.
Center for Lifespan Changes in Brain and Cognition
Department of Psychology
University of Oslo