Dear FS team,

I am trying to find what is the  connection between white matter tracts with reduced FA and a number of cortical regions/clusters with significant reduction in cortical thickness from QDEC.

Is there a way to overlap my cortical regions with reduced thickness more exactly the clusters from QDEC on the connectivity maps in FSL.

How I create a mask of the QDEC clusters and used them in tractography?  The tractography/ connectivity maps has been performed on the MNI standard space.

Any suggestion will be greatly appreciated.

Antonella