Hi,

Sorry if this is redundant, I think I'm having the same segmentation problem as others last week, with the mri_convert command I've previously used (with Unix) with no problem.  I've tried setenv trick that was previously suggested, but it didn't make any difference.  Has anyone had any luck with it?

Thanks,
Jenn

recon-all -autorecon1 -s PROZ06006 -i
/space/multnomah/3/users/gow
/PROZ06/MRI_raw/PROZ06006/681000-3-1.dcm   -i
/space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000- 4-1.dcm  -i
/space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000-5-1.dcm -i
/space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000-6-1.dcm

YIELDS:

INFO: SUBJECTS_DIR is /autofs/space/multnomah_003/users/gow/PROZ06/MRI
Actual FREESURFER_HOME /autofs/space/freesurfer/centos4.0/stable4
Linux dgow 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:21:39 CDT 2006 i686 i686 i386
GNU/Linux
/autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006

 mri_convert /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/6810
00-3-1.dcm /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006/mri/orig/0
01.mgz

mri_convert /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/68100
0-3-1.dcm /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006/mri/orig/00
1.mgz
$Id: mri_convert.c,v 1.146 2007/07/26 19:26:26 greve Exp $
reading from /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/6810
00-3-1.dcm...
Getting Series No
INFO: Found 2352 files in /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/P
ROZ06006
INFO: Scanning for Series Number 3
Scanning Directory
INFO: found 128 files in series
INFO: loading series header info.

RunNo = 2
INFO: sorting.
INFO: (256 256 128), nframes = 1, ismosaic=0
AutoAlign matrix detected
AutoAlign Matrix ---------------------
 0.994  -0.056  -0.090  - 8.971 ;
 0.036   0.977  -0.211  -13.941;
 0.100   0.207   0.973   5.321;
 0.000   0.000   0.000   1.000;

MGH DTI SeqPack Info
0 *tfl3d1_ns 0.000000 0
1 *tfl3d1_ns 0.000000 0
2 *tfl3d1_ns 0.000000 0
3 *tfl3d1_ns 0.000000 0
4 *tfl3d1_ns 0.000000 0
5 *tfl3d1_ns 0.000000 0
6 *tfl3d1_ns 0.000000 0
7 *tfl3d1_ns 0.000000 0
8 *tfl3d1_ns 0.000000 0
9 *tfl3d1_ns 0.000000 0
10 *tfl3d1_ns 0.000000 0
11 *tfl3d1_ns 0.000000 0
12 *tfl3d1_ns 0.000000 0
13 *tfl3d1_ns 0.000000 0
14 *tfl3d1_ns 0.000000 0
15 *tfl3d1_ns 0.000000 0
16 *tfl3d1_ns 0.000000 0
17 *tfl3d1_ns 0.000000 0
18 *tfl3d1_ns 0.000000 0
19 *tfl3d1_ns 0.000000 0
20 *tfl3d1_ns 0.000000 0
21 *tfl3d1_ns 0.000000 0
22 *tfl3d1_ns 0.000000 0
23 *tfl3d1_ns 0.000000 0
24 *tfl3d1_ns 0.000000 0
25 *tfl3d1_ns 0.000000 0
26 *tfl3d1_ns 0.000000 0
27 *tfl3d1_ns 0.000000 0
28 *tfl3d1_ns 0.000000 0
29 *tfl3d1_ns 0.000000 0
30 *tfl3d1_ns 0.000000 0
31 *tfl3d1_ns 0.000000 0
32 *tfl3d1_ns 0.000000 0
33 *tfl3d1_ns 0.000000 0
34 *tfl3d1_ns 0.000000 0
35 *tfl3d1_ns 0.000000 0
36 *tfl3d1_ns 0.000000 0
37 *tfl3d1_ns 0.000000 0
38 *tfl3d1_ns 0.000000 0
39 *tfl3d1_ns 0.000000 0
40 *tfl3d1_ns 0.000000 0
41 *tfl3d1_ns 0.000000 0
42 *tfl3d1_ns 0.000000 0
43 *tfl3d1_ns 0.000000 0
44 *tfl3d1_ns 0.000000 0
45 *tfl3d1_ns 0.000000 0
46 *tfl3d1_ns 0.000000 0
47 *tfl3d1_ns 0.000000 0
48 *tfl3d1_ns 0.000000 0
49 *tfl3d1_ns 0.000000 0
50 *tfl3d1_ns 0.000000 0
51 *tfl3d1_ns 0.000000 0
52 *tfl3d1_ns 0.000000 0
53 *tfl3d1_ns 0.000000 0
54 *tfl3d1_ns 0.000000 0
55 *tfl3d1_ns 0.000000 0
56 *tfl3d1_ns 0.000000 0
57 *tfl3d1_ns 0.000000 0
58 *tfl3d1_ns 0.000000 0
59 *tfl3d1_ns 0.000000 0
60 *tfl3d1_ns 0.000000 0
61 *tfl3d1_ns 0.000000 0
62 *tfl3d1_ns 0.000000 0
63 *tfl3d1_ns 0.000000 0
64 *tfl3d1_ns 0.000000 0
65 *tfl3d1_ns 0.000000 0
66 *tfl3d1_ns 0.000000 0
67 *tfl3d1_ns 0.000000 0
68 *tfl3d1_ns 0.000000 0
69 *tfl3d1_ns 0.000000 0
70 *tfl3d1_ns 0.000000 0
71 *tfl3d1_ns 0.000000 0
72 *tfl3d1_ns 0.000000 0
73 *tfl3d1_ns 0.000000 0
74 *tfl3d1_ns 0.000000 0
75 *tfl3d1_ns 0.000000 0
76 *tfl3d1_ns 0.000000 0
77 *tfl3d1_ns 0.000000 0
78 *tfl3d1_ns 0.000000 0
79 *tfl3d1_ns 0.000000 0
80 *tfl3d1_ns 0.000000 0
81 *tfl3d1_ns 0.000000 0
82 *tfl3d1_ns 0.000000 0
83 *tfl3d1_ns 0.000000 0
84 *tfl3d1_ns 0.000000 0
85 *tfl3d1_ns 0.000000 0
86 *tfl3d1_ns 0.000000 0
87 *tfl3d1_ns 0.000000 0
88 *tfl3d1_ns 0.000000 0
89 *tfl3d1_ns 0.000000 0
90 *tfl3d1_ns 0.000000 0
91 *tfl3d1_ns 0.000000 0
92 *tfl3d1_ns 0.000000 0
93 *tfl3d1_ns 0.000000 0
94 *tfl3d1_ns 0.000000 0
95 *tfl3d1_ns 0.000000 0
96 *tfl3d1_ns 0.000000 0
97 *tfl3d1_ns 0.000000 0
98 *tfl3d1_ns 0.000000 0
99 *tfl3d1_ns 0.000000 0
100 *tfl3d1_ns 0.000000 0
101 *tfl3d1_ns 0.000000 0
102 *tfl3d1_ns 0.000000 0
103 *tfl3d1_ns 0.000000 0
104 *tfl3d1_ns 0.000000 0
105 *tfl3d1_ns 0.000000 0
106 *tfl3d1_ns 0.000000 0
107 *tfl3d1_ns 0.000000 0
108 *tfl3d1_ns 0.000000 0
109 *tfl3d1_ns 0.000000 0
110 *tfl3d1_ns 0.000000 0
111 *tfl3d1_ns 0.000000 0
112 *tfl3d1_ns 0.000000 0
113 *tfl3d1_ns 0.000000 0
114 *tfl3d1_ns 0.000000 0
115 *tfl3d1_ns 0.000000 0
116 *tfl3d1_ns 0.000000 0
117 *tfl3d1_ns 0.000000 0
118 *tfl3d1_ns 0.000000 0
119 *tfl3d1_ns 0.000000 0
120 *tfl3d1_ns 0.000000 0
121 *tfl3d1_ns 0.000000 0
122 *tfl3d1_ns 0.000000 0
123 *tfl3d1_ns 0.000000 0
124 *tfl3d1_ns 0.000000 0
125 *tfl3d1_ns 0.000000 0
126 *tfl3d1_ns 0.000000 0
127 *tfl3d1_ns 0.000000 0
Segmentation fault
Linux dgow 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:21:39 CDT 2006 i686 i686 i386
GNU/Linux

recon-all exited with ERRORS at Fri Sep  7 11:47:14 EDT 2007