Hi Rudolph,<br><br>I was wondering if you could give me any hint regarding how to use an apriori GM segmentation in freesurfer. I basically already have a good segmentation of GM vs WM and CSF from spm and would like to use this towards the computing cortical thickness. <br>
<br>Thanks,<br>Elisa<br><br><div class="gmail_quote">2009/10/7 Bruce Fischl <span dir="ltr">&lt;<a href="mailto:fischl@nmr.mgh.harvard.edu">fischl@nmr.mgh.harvard.edu</a>&gt;</span><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Elisa,<br>
<br>
Rudolph Pienaar (ccd) put together something for this I think.<br>
<br>
cheers<br><font color="#888888">
Bruce</font><div><div></div><div class="h5"><br>
<br>
<br>
On Wed, 7 Oct 2009, Elisa Dell&#39;Oglio wrote:<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi all,<br>
<br>
I have a question regarding cortical thickness estimation in freesurfer. I<br>
was wondering whether it is possible to input in freesurfer the gray matter<br>
segmentation as an a priori.<br>
Specifically, I run freesurfer on a set of cases on which I previously run<br>
spm and obtained a good discrimination between GM, WM and CSF.<br>
I would like to use these segmentation instead to proceed with manual edits<br>
on freesurfer segmentation output for gray matter segmentation, that<br>
sometimes was not segmented correctly. Would this be possible?<br>
<br>
Thanks a lot,<br>
Elisa<br>
<br>
</blockquote>
</div></div></blockquote></div><br>