did you try to load it as a surface? If you want to upload the entire
subject dir (tarred and gzipped) to our ftp site we will take a look. In
the meantime you can also just post an image of the volume in 3 planes,
that might help
cheers
Bruce
On Fri, 21 Dec 2018, ΗγΑ€Ό± wrote:
> External Email - Use Caution
>
> Thank you for your reply.
>
> Is it impossible with 2mm? Unfortunately, the data we collect for the study all have same thickness of voxel.
> And, there was a problem like the photo below, and only the recon-all.log could be attached to you.
>
>
> Thanks,
> Jeongson
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 20 Dec 2018 10:13:16 -0500 (EST)
> From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> Subject: Re: [Freesurfer] recon-all error : Too many intersected faces
> for face 120047 (60827, 60826, 59444)
> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
> Message-ID:
> <alpine.LRH.2.20.1812201012130.17732@gate.nmr.mgh.harvard.edu>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Jeongson
>
> it certainly looks like something went badly wrong. 2mm may be too thick
> - we typically recommend <=1.5mm for any voxel direction. Can you send us
> the recon-all.log? And maybe a snapshot of the volume with the
> lh.orig.nofix and rh.orig.nofix overlaid?
>
> cheers
> Bruce
>
>
> On Thu, 20 Dec
> 2018, ??? wrote:
>
>> External Email - Use Caution
>>
>> Hello Freesurfer developers
>> I'm starting using FS and I have a problem running recon-all.
>> #recon-all -s /usr/local/freesurfer/subjects/20180108 -all
>> I've attached the output to a ERROR image file.
>>
>> We're doing on a GE scanner 3T, T1-FSPGR axial slices, 3D with a slice thickness of 2.0mm.
>> freesurfer version : freesurfer-x86_64-unknown-linux-gnu-stable6-20170118
>>
>> Any help is greatly appreciated.
>>
>> Thanks.
>>
>> Jeongson
>
> ------------------------------