Ph.D. Candidate

McGill University

Integrated Program in Neuroscience

Psychology

On Tue, Apr 5, 2016 at 9:37 PM, Trisanna Sprung-Much <trisanna.sprung-much@mail.mcgill.ca> wrote:

Hi Dr. Fischl

I have a mixture - some of the labels were painted in the MNI305 space (older ones) and the more recent ones are registered to the ICBM152 nonlinear symmetric VI (2006) template.

Best

Trisanna

--

Ph.D. Candidate
McGill University

Integrated Program in Neuroscience

Psychology

On Tue, Apr 5, 2016 at 6:34 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Trisanna

what space are your labels in?

cheers
Bruce
On Tue, 5 Apr 2016, Trisanna Sprung-Much
wrote:

> Hi Freesurfer
>
> I have some labels (.mnc) that are painted voxels generated from a Montreal
> Neurological Institute software. I am trying to project the labels onto the
> surfaces generated from recon-all that I applied to the corresponding MRI
> volumes.
>
> I used mri_vol2surf:
>
> mri_vol2surf --src labels.mnc --out test.mgz --srcreg talairach.auto.xfm
> --hemi lh
>
> and got the following error:
>
> Error reading inplaneres from talairach.auto.xfm
>
>
> Do I need a .dat file? If so, how can I attain it? Essentially, what is the
> registration file that I am supposed to be using?
>
> Many thanks!
>
> Trisanna
>
> --
> Ph.D. CandidateMcGill University
> Integrated Program in Neuroscience
> Psychology
>
>
>
>
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