Hello Zeke,

I must make a clarification: I use freesurfer on a PC cluster.

I have submitted the same image several times and on different machines.

Sometimes it was killed sometimes not.

 

If I submit a second time the failed job it may happen that it is terminated with success.

 

thank you very much




----Messaggio originale----
Da: zkaufman@nmr.mgh.harvard.edu
Data: 24-lug-2013 21.53
A: "Andrea Tateo"<andrea.tateo@virgilio.it>
Cc: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: R: Re: [Freesurfer] problem with nu_correct

Andrea,

Hmmm. I am not able to duplicate this error on my end using local data.
A few things:

1) What happens when you type "nu_evaluate -help"? Do you get help
output or does it crash?

2) Does this error occur for all subjects or just this one used for this
particular recon?

3) Does the brain image look "normal", meaning is there anything
obviously wrong with the input data, which you can see by opening it
with Freeview?

-Zeke

On 07/24/2013 11:22 AM, Andrea Tateo wrote:
> Hello zkaufman,
>
> thanks for your involvement
>
> Andrea
>
>
>
> ----Messaggio originale----
> Da: zkaufman@nmr.mgh.harvard.edu
> Data: 24-lug-2013 16.52
> A: "Andrea Tateo"<andrea.tateo@virgilio.it>
> Cc: <freesurfer@nmr.mgh.harvard.edu>
> Ogg: Re: [Freesurfer] problem with nu_correct
>
> Hello Andrea,
>
> Can you please attach the entire recon-all.log file? It will be located
> in $SUBJECT_DIR/subject_name/scripts/recon-all.log
>
> -Zeke
>
> On 07/24/2013 09:35 AM, Andrea Tateo wrote:
>  > Hi FreeSurfer expert,
>  >
>  > I have a problem with command "recon-all".
>  >
>  > In recon-all.log I can to read
>  >
>  >   nu_correct: crashed while running nu_evaluate (termination status=9)
>  >
>  > Thank for your help
>  >
>  >
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>  >
>
>
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