According this information https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ViewCSDFile, I try to find the csd files in the csd folder(I am not sure this is what you just told me). But there are the csd files as I run simulation with --bg option.

Also I try to find the csd files in the first contrast directory, but I think, maybe I am wrong, none of these is csd files that you suggest.

Doug, would you please describe it more detailly, as I am a new user for FS?

Thanks doug and others.

发件人：Douglas Greve <greve@nmr.mgh.harvard.edu>

发送时间：2014-02-21 23:49

主题：Re: [Freesurfer] error in mri_glmfit-sim when using --bg and doss

收件人："freesurfer"<freesurfer@nmr.mgh.harvard.edu>

When you actually run the simulation, it only runs it for the first contrast. The simulation is the same for all contrasts, so you can just copy the csd files from the first contrast to the others, then run mri_glmfit-sim with the --no-sim option
doug

On 2/21/14 5:47 AM, charujing123 wrote:

Hi FS experts,

I ran the mri_glmfit with DOSS, followed by the mri_glmfit-sim(running with --bg option). I have 4 contrasts, but only the first one has some files of corrected results(i.e. mc-z.neg.3.sig.cluster.summary). I donot know why. So I upload the log file in the attachment. However, previously I ran mri_glmfit by DODS, and mri_glmfit-sim with --bg option.All the contrasts have corrected results.

Thanks.

All the best.

Rujing Zha

2014-02-21

charujing123
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