On 11/16/18 7:34 PM, YAN Chao-Gan wrote:

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Dear freesurfer experts,

I have a pretty naive question but would like to confirm.

When we use --3spaces option in multiple comparison correction, does that mean we set the Cluster-wise threshold (cwp, not Cluster Defining Threshold or Cluster Forming Threshold) to 0.5/3=0.0167 for lh. Similar cwp at 0.0167 for rh and subcortical?

Correct.

In addition, if we use "--cortex" to restrict the calculation on cortex only, where can we find the corresponding mask or label file for cortex?

Load the ?h.cortex.label in fsaverage

Thanks,

Chao-Gan

--

Chao-Gan YAN, Ph.D.

Professor, Principal Investigator
Deputy Director, Magnetic Resonance Imaging Research Center
Institute of Psychology, Chinese Academy of Sciences
16 Lincui Road, Chaoyang District, Beijing 100101, China

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Initiator

DPABI, DPARSF, PRN and The R-fMRI Network (RFMRI.ORG)

http://rfmri.org/yan

http://scholar.google.com/citations?user=lJQ9B58AAAAJ

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