Hi,

I am trying to run the mri_label2vol but I am getting the following error. I am not sure which annot file I should use for my QDEC clusters. I tried to use my annot file from mri_glmfit-sim but it didn't work. I was running:

mri_label2vol --temp MNI152_T1_1mm_brain.nii.gz --reg $FREESURFER_HOME/average/mni152.register.dat --fillthresh 0 --subject fsaverage --hemi lh --annot /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/lh.L_frontal.glmdir/lh-Avg-thickness-Cor/ocn.mgh --o /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/qdec/lh_L_FrontalEpilepsy/lh-Avg-Intercept-thickness/sig2MNI.nii

and my error:

Number of labels: 0
Annot File:      /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/lh.L_frontal.glmdir/lh-Avg-thickness-Cor/ocn.mgh
Template Volume: MNI152_T1_1mm_brain.nii.gz
Outut Volume: /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/qdec/lh_L_FrontalEpilepsy/lh-Avg-Intercept-thickness/sig2MNI.nii
Registration File: /usr/local/freesurfer//average/mni152.register.dat
Fill Threshold: 0
Label Vox Vol:  1
ProjType:       (null)
ProjTypeId:     0
ProjStart:      0
ProjStop:       0
ProjDelta:      0.1
Subject:  fsaverage
Hemi:     lh
UseNewASeg2Vol:  1
DoLabelStatVol  0
$Id: mri_label2vol.c,v 1.34.2.1 2011/03/22 18:09:04 greve Exp $
Template RAS-to-Vox: --------
-1.000   0.000   0.000   91.000;
-0.000  -0.000  -1.000   109.000;
-0.000   1.000  -0.000   91.000;
 0.000   0.000   0.000   1.000;
Template Voxel Volume: 1
nHits Thresh: 0
Loading registration from /usr/local/freesurfer//average/mni152.register.dat
RegMat: --------
 0.998  -0.007   0.018   0.957;
-0.013  -0.009   0.997  -17.816;
-0.015  -1.001   0.002  -18.550;
 0.000   0.000   0.000   1.000;
Label RAS-to-Vox: --------
-0.998   0.007  -0.018   90.043;
 0.015   1.001  -0.002   127.550;
-0.013  -0.009   0.997   73.184;
 0.000   0.000   0.000   1.000;
  INFO: loading surface  /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/qdec/lh_L_FrontalEpilepsy/lh-Avg-Intercept-thickness/fsaverage/surf/lh.white
nvertices = 163842
Reading thickness /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/qdec/lh_L_FrontalEpilepsy/lh-Avg-Intercept-thickness/fsaverage/surf/lh.thickness
Loading annotations from /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/lh.L_frontal.glmdir/lh-Avg-thickness-Cor/ocn.mgh
MRISreadAnnotationIntoArray: vertex index out of range: 163842 i=00000001, in_array_size=163842
    annot file: /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/lh.L_frontal.glmdir/lh-Avg-thickness-Cor/ocn.mgh
reading colortable from annotation file...
colortable with 1 entries read (originally )
annotidmax = 0
ERROR: load annot file /media/2Tra/Antonella_Backup/Antonella_2011/DTI_FLE_NPI/FLE_FS_QDEC/lh.L_frontal.glmdir/lh-Avg-thickness-Cor/ocn.mgh

Thanks,

AK

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