I think something is wrong if you only have 45 subjects, it should not
take that long. Can you send your mri_glmfit command line and the
terminal output of mri_glmfit-sim?

On 12/06/2018 01:14 PM, Sahil Bajaj wrote:
>
>         External Email - Use Caution
>
> Dear Dr. Greve,
>
> I have 45 subjects as input. SLURM is also a parallel processing
> pipeline similar to PBS, Grid Engine, or Condor:
> https://en.wikipedia.org/wiki/Slurm_Workload_Manager
> I am not sure how can I speed up the mri_glmfit-sim processing.
>
> Thanks !
>
> On Thu, Dec 6, 2018 at 11:07 AM Greve, Douglas N.,Ph.D.
> <DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu>> wrote:
>
>     I don't know what Slurm is, so I guess the answer is no. If you have
>     multiple processors on your machine, you can use the --bg option. In
>     general, I have not seen it take that long to run. How many input
>     subjects do you have?
>
>     On 12/06/2018 12:55 PM, Sahil Bajaj wrote:
>     >
>     >         External Email - Use Caution
>     >
>     > Hello experts,
>     >
>     > I was trying to run mri_glmfit-sim --glmdir XY.glmdir --perm
>     1000 1.3
>     > abs --cwp 0.05 --2spaces command, but its taking forever even if I
>     > reduce # of permutations from 1000 to 10.
>     >
>     > I was just wondering if there’s a version of FreeSurfer for Slurm
>     > parallel processing clusters.
>     >
>     > Thanks !
>     > Sahil
>     >
>     >
>     > _______________________________________________
>     > Freesurfer mailing list
>     > Freesurfer@nmr.mgh.harvard.edu
>     <mailto:Freesurfer@nmr.mgh.harvard.edu>
>     > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>     _______________________________________________
>     Freesurfer mailing list
>     Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>     https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer