External Email - Use Caution        

Hi Bruce,


I was wondering if there is way to continue the process to recon-all once I have done the recon-all with the option -autorecon1.

Thanks a lot,

Aldo

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Fischl, Bruce <BFISCHL@mgh.harvard.edu>
Sent: Monday, May 24, 2021 10:17 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] How to extract the GM and WM
 

Hi Aldo

 

Usually we just run recon-all with -all instead of the individual -autorecon options. This will give you pretty much everything, including GM and WM

 

Cheers

Bruce

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Camargo, Aldo
Sent: Sunday, May 23, 2021 11:25 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] How to extract the GM and WM

 

        External Email - Use Caution        

        External Email - Use Caution        

Hi Freesurfer experts:

 

I want to extract the White Matter and the Gray Matter from a T1 image. I have extracted the brain by using the command:



recon-all with the option -autorecon1

 

Thanks a lot and have a nic day,

 

Aldo