Dear Freesurfer developers,

I would like to perform an analysis that requires me to have all of my subjects surface based and diffusion data in the same space.

I have performed recon-all –qcache so that all my surface based measures are in fsaverage space.

I now would like to register the FA.nii and MD.nii images to fsaverage space as well.

Could you please provide me some command line examples to perform this? I am unsure if I should be using mri_vol2vol or mri_cvs_register.

Thank you for your support.

Best, Derek

Derek Sayre Andrews, MSc
PhD Candidate

The Sackler Institute for Translational Neurodevelopment

Department of Forensic and Neurodevelopmental Sciences

Institute of Psychiatry, Psychology & Neuroscience, King's College London

Telephone: +44 (0)20 7848 5701
Email: Derek.Andrews@kcl.ac.uk