Fri May 19 21:03:47 IST 2017 /mnt/research/freesurfer_analysis/grp229/grp229 /usr/local/freesurfer/bin/recon-all -all -i grp229_t1.nii -s grp229 -sd grp229 -use-gpu subjid grp229 setenv SUBJECTS_DIR /mnt/research/freesurfer_analysis/grp229 FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Linux rameshbabu 4.4.0-78-generic #99-Ubuntu SMP Thu Apr 27 15:29:09 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63592 maxlocks unlimited maxsignal 63592 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 16326760 895184 14578140 22412 853436 15097072 Swap: 16669692 0 16669692 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:47-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/05/19-15:33:48-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: rb Machine: rameshbabu Platform: Linux PlatformVersion: 4.4.0-78-generic CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /usr/local/freesurfer/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /mnt/research/freesurfer_analysis/grp229/grp229 mri_convert /mnt/research/freesurfer_analysis/grp229_t1.nii /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig/001.mgz mri_convert.bin /mnt/research/freesurfer_analysis/grp229_t1.nii /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig/001.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /mnt/research/freesurfer_analysis/grp229_t1.nii... TR=7.52, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.0392419, -0.981754, 0.186065) j_ras = (0.00118542, 0.186162, 0.982518) k_ras = (0.999229, -0.0387765, 0.0061416) writing to /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Fri May 19 21:03:51 IST 2017 Found 1 runs /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig/001.mgz /mnt/research/freesurfer_analysis/grp229/grp229/mri/rawavg.mgz /mnt/research/freesurfer_analysis/grp229/grp229 mri_convert /mnt/research/freesurfer_analysis/grp229/grp229/mri/rawavg.mgz /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig.mgz --conform mri_convert.bin /mnt/research/freesurfer_analysis/grp229/grp229/mri/rawavg.mgz /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /mnt/research/freesurfer_analysis/grp229/grp229/mri/rawavg.mgz... TR=7.52, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.0392419, -0.981754, 0.186065) j_ras = (0.00118542, 0.186162, 0.982518) k_ras = (0.999229, -0.0387765, 0.0061416) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig.mgz... mri_add_xform_to_header -c /mnt/research/freesurfer_analysis/grp229/grp229/mri/transforms/talairach.xfm /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig.mgz /mnt/research/freesurfer_analysis/grp229/grp229/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach Fri May 19 21:03:59 IST 2017 /mnt/research/freesurfer_analysis/grp229/grp229/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 /mnt/research/freesurfer_analysis/grp229/grp229/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 nIters 1 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux rameshbabu 4.4.0-78-generic #99-Ubuntu SMP Thu Apr 27 15:29:09 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux Fri May 19 21:03:59 IST 2017 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.3069 /mnt/research/freesurfer_analysis/grp229/grp229/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3069/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.3069/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=7.52, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -3.72529e-09, 0) j_ras = (4.65661e-10, 1.35333e-08, -1) k_ras = (0, 1, 7.71252e-10) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.3069/nu0.mnc... -------------------------------------------------------- Iteration 1 Fri May 19 21:04:00 IST 2017 nu_correct -clobber ./tmp.mri_nu_correct.mni.3069/nu0.mnc ./tmp.mri_nu_correct.mni.3069/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.3069/0/ -iterations 1000 -distance 50 [rb@rameshbabu:/mnt/research/freesurfer_analysis/grp229/grp229/mri/] [2017-05-19 21:04:00] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3069/0/ ./tmp.mri_nu_correct.mni.3069/nu0.mnc ./tmp.mri_nu_correct.mni.3069/nu1.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 20 CV of field change: 0.000990604 mri_convert ./tmp.mri_nu_correct.mni.3069/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.3069/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.3069/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -3.72529e-09, 0) j_ras = (4.65661e-10, 1.35333e-08, -1) k_ras = (0, 1, 7.71252e-10) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Fri May 19 21:04:33 IST 2017 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Fri May 19 21:04:33 IST 2017 Ended at Fri May 19 21:05:03 IST 2017 talairach_avi done cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Fri May 19 21:05:05 IST 2017 /mnt/research/freesurfer_analysis/grp229/grp229/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.8316, pval=0.9628 >= threshold=0.0050) awk -f /usr/local/freesurfer/bin/extract_talairach_avi_QA.awk /mnt/research/freesurfer_analysis/grp229/grp229/mri/transforms/talairach_avi.log tal_QC_AZS /mnt/research/freesurfer_analysis/grp229/grp229/mri/transforms/talairach_avi.log TalAviQA: 0.97747 z-score: 0 #-------------------------------------------- #@# Nu Intensity Correction Fri May 19 21:05:05 IST 2017 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /mnt/research/freesurfer_analysis/grp229/grp229/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux rameshbabu 4.4.0-78-generic #99-Ubuntu SMP Thu Apr 27 15:29:09 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux Fri May 19 21:05:05 IST 2017 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.3601 /mnt/research/freesurfer_analysis/grp229/grp229/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3601/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.3601/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=7.52, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -3.72529e-09, 0) j_ras = (4.65661e-10, 1.35333e-08, -1) k_ras = (0, 1, 7.71252e-10) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.3601/nu0.mnc... -------------------------------------------------------- Iteration 1 Fri May 19 21:05:06 IST 2017 nu_correct -clobber ./tmp.mri_nu_correct.mni.3601/nu0.mnc ./tmp.mri_nu_correct.mni.3601/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.3601/0/ [rb@rameshbabu:/mnt/research/freesurfer_analysis/grp229/grp229/mri/] [2017-05-19 21:05:06] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3601/0/ ./tmp.mri_nu_correct.mni.3601/nu0.mnc ./tmp.mri_nu_correct.mni.3601/nu1.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 16 CV of field change: 0.000997356 -------------------------------------------------------- Iteration 2 Fri May 19 21:05:30 IST 2017 nu_correct -clobber ./tmp.mri_nu_correct.mni.3601/nu1.mnc ./tmp.mri_nu_correct.mni.3601/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.3601/1/ [rb@rameshbabu:/mnt/research/freesurfer_analysis/grp229/grp229/mri/] [2017-05-19 21:05:30] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3601/1/ ./tmp.mri_nu_correct.mni.3601/nu1.mnc ./tmp.mri_nu_correct.mni.3601/nu2.imp Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 8 CV of field change: 0.000966461 mri_binarize --i ./tmp.mri_nu_correct.mni.3601/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.3601/ones.mgz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /mnt/research/freesurfer_analysis/grp229/grp229/mri cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.3601/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.3601/ones.mgz sysname Linux hostname rameshbabu machine x86_64 user rb input ./tmp.mri_nu_correct.mni.3601/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.3601/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3601/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.3601/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3601/input.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3601/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.3601/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3601/input.mean.dat sysname Linux hostname rameshbabu machine x86_64 user rb UseRobust 0 Loading ./tmp.mri_nu_correct.mni.3601/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.3601/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3601/ones.mgz --i ./tmp.mri_nu_correct.mni.3601/nu2.mnc --sum ./tmp.mri_nu_correct.mni.3601/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3601/output.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3601/ones.mgz --i ./tmp.mri_nu_correct.mni.3601/nu2.mnc --sum ./tmp.mri_nu_correct.mni.3601/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3601/output.mean.dat sysname Linux hostname rameshbabu machine x86_64 user rb UseRobust 0 Loading ./tmp.mri_nu_correct.mni.3601/ones.mgz Loading ./tmp.mri_nu_correct.mni.3601/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.3601/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.3601/nu2.mnc ./tmp.mri_nu_correct.mni.3601/nu2.mnc mul 1.01214897968393673336 Saving result to './tmp.mri_nu_correct.mni.3601/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.3601/nu2.mnc nu.mgz --like orig.mgz mri_convert.bin ./tmp.mri_nu_correct.mni.3601/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.3601/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -3.72529e-09, 0) j_ras = (4.65661e-10, 1.35333e-08, -1) k_ras = (0, 1, 7.71252e-10) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 7 seconds. mapping ( 7, 145) to ( 3, 110) Fri May 19 21:06:19 IST 2017 mri_nu_correct.mni done mri_add_xform_to_header -c /mnt/research/freesurfer_analysis/grp229/grp229/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Fri May 19 21:06:19 IST 2017 /mnt/research/freesurfer_analysis/grp229/grp229/mri mri_normalize -g 1 -mprage nu.mgz T1.mgz using max gradient = 1.000 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading from nu.mgz... normalizing image... talairach transform 1.07981 -0.01452 -0.03941 -0.27290; 0.01455 1.06628 0.24083 4.42353; 0.04545 -0.22263 1.16205 -4.91042; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 19 Starting OpenSpline(): npoints = 19 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 68 (68), valley at 42 (42) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 67 (67), valley at 23 (23) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 1 minutes and 33 seconds. #-------------------------------------------- #@# Skull Stripping Fri May 19 21:07:53 IST 2017 /mnt/research/freesurfer_analysis/grp229/grp229/mri mri_em_register_cuda -rusage /mnt/research/freesurfer_analysis/grp229/grp229/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /usr/local/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2012 NVIDIA Corporation Built on Fri_Sep_21_17:28:58_PDT_2012 Cuda compilation tools, release 5.0, V0.2.1221 Driver : 8.0 Runtime : 5.0 Acquiring CUDA device Using default device CUDA device: GeForce GT 610 aligning to atlas containing skull, setting unknown_nbr_spacing = 5 == Number of threads available to mri_em_register_cuda for OpenMP = 1 == reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca'... average std = 22.9 using min determinant for regularization = 52.6 0 singular and 9002 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 8.7 or > 569.1 total sample mean = 77.6 (1399 zeros) ************************************************ spacing=8, using 3243 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3243, passno 0, spacing 8 resetting wm mean[0]: 100 --> 108 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=17.0 skull bounding box = (52, 40, 18) --> (213, 255, 224) using (106, 112, 121) as brain centroid... mean wm in atlas = 108, using box (86,85,96) --> (125, 138,146) to find MRI wm before smoothing, mri peak at 108 robust fit to distribution - 108 +- 4.9 after smoothing, mri peak at 108, scaling input intensities by 1.000 scaling channel 0 by 1 initial log_p = -13687.219 ************************************************ First Search limited to translation only. ************************************************ max log p = -13687.218750 @ (0.000, 0.000, 0.000) max log p = -12963.076172 @ (-4.545, -4.545, -4.545) max log p = -12963.076172 @ (0.000, 0.000, 0.000) max log p = -12963.076172 @ (0.000, 0.000, 0.000) max log p = -12908.496094 @ (-0.568, 0.568, -2.841) max log p = -12908.496094 @ (0.000, 0.000, 0.000) Found translation: (-5.1, -4.0, -7.4): log p = -3.980 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 1.000: max_log_p=-12355.686, old_max_log_p =-3.980 (thresh=-4.0) 1.07500 0.00000 0.00000 -14.86281; 0.00000 1.22567 0.14032 -46.06050; 0.00000 -0.15011 0.99144 15.56387; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.250: max_log_p=-12122.589, old_max_log_p =-12355.686 (thresh=-12343.3) 1.03358 -0.04238 0.02919 -6.84795; 0.03384 1.18324 0.10355 -42.06712; -0.03322 -0.10928 0.97615 15.83619; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.250: max_log_p=-12122.589, old_max_log_p =-12122.589 (thresh=-12110.5) 1.03358 -0.04238 0.02919 -6.84795; 0.03384 1.18324 0.10355 -42.06712; -0.03322 -0.10928 0.97615 15.83619; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 3 nscales = 2 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.062: max_log_p=-12054.193, old_max_log_p =-12122.589 (thresh=-12110.5) 1.03194 -0.00289 0.02480 -11.71309; -0.00024 1.18199 0.11890 -39.73766; -0.02505 -0.12928 0.97566 18.13548; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.062: max_log_p=-12042.488, old_max_log_p =-12054.193 (thresh=-12042.1) 1.03557 -0.00290 0.02489 -12.19366; -0.00024 1.18199 0.11890 -39.73766; -0.02496 -0.12883 0.97223 18.46143; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3243 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.03557 -0.00290 0.02489 -12.19366; -0.00024 1.18199 0.11890 -39.73766; -0.02496 -0.12883 0.97223 18.46143; 0.00000 0.00000 0.00000 1.00000; nsamples 3243 Quasinewton: input matrix 1.03557 -0.00290 0.02489 -12.19366; -0.00024 1.18199 0.11890 -39.73766; -0.02496 -0.12883 0.97223 18.46143; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 007: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.03557 -0.00290 0.02489 -12.19366; -0.00024 1.18199 0.11890 -39.73766; -0.02496 -0.12883 0.97223 18.46143; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.713 (old=-4.221) transform before final EM align: 1.03557 -0.00290 0.02489 -12.19366; -0.00024 1.18199 0.11890 -39.73766; -0.02496 -0.12883 0.97223 18.46143; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 364799 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.03557 -0.00290 0.02489 -12.19366; -0.00024 1.18199 0.11890 -39.73766; -0.02496 -0.12883 0.97223 18.46143; 0.00000 0.00000 0.00000 1.00000; nsamples 364799 Quasinewton: input matrix 1.03557 -0.00290 0.02489 -12.19366; -0.00024 1.18199 0.11890 -39.73766; -0.02496 -0.12883 0.97223 18.46143; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 009: -log(p) = 4.1 tol 0.000000 final transform: 1.03557 -0.00290 0.02489 -12.19366; -0.00024 1.18199 0.11890 -39.73766; -0.02496 -0.12883 0.97223 18.46143; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach_with_skull.lta... mri_em_register utimesec 207.576000 mri_em_register stimesec 200.584000 mri_em_register ru_maxrss 704512 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 198108 mri_em_register ru_majflt 4 mri_em_register ru_nswap 0 mri_em_register ru_inblock 149832 mri_em_register ru_oublock 24 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 630459 mri_em_register ru_nivcsw 6032 registration took 7 minutes and 16 seconds. mri_watershed -rusage /mnt/research/freesurfer_analysis/grp229/grp229/touch/rusage.mri_watershed.dat -T1 -brain_atlas /usr/local/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=129 y=120 z=115 r=86 first estimation of the main basin volume: 2747215 voxels Looking for seedpoints 2 found in the cerebellum 17 found in the rest of the brain global maximum in x=154, y=110, z=74, Imax=255 CSF=16, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=839234486 voxels, voxel volume =1.000 = 839234486 mmm3 = 839234.496 cm3 done. PostAnalyze...Basin Prior 20 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=130,y=124, z=109, r=10457 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=96 , nb = 41642 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=9 , nb = -1032709736 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=73 , nb = -1044305715 RIGHT_BRAIN CSF_MIN=0, CSF_intensity=25, CSF_MAX=54 , nb = 1038164454 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=89 , nb = 1078817086 OTHER CSF_MIN=1, CSF_intensity=14, CSF_MAX=31 , nb = 1069290236 Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 96, 50, 38, 64 after analyzing : 38, 50, 50, 53 RIGHT_CER before analyzing : 9, 13, 37, 72 after analyzing : 9, 29, 37, 39 LEFT_CER before analyzing : 73, 48, 34, 76 after analyzing : 26, 48, 48, 55 RIGHT_BRAIN before analyzing : 54, 45, 39, 63 after analyzing : 39, 45, 45, 49 LEFT_BRAIN before analyzing : 89, 49, 39, 63 after analyzing : 37, 49, 49, 52 OTHER before analyzing : 31, 33, 40, 93 after analyzing : 31, 37, 40, 51 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...66 iterations *********************VALIDATION********************* curvature mean = -0.013, std = 0.012 curvature mean = 68.930, std = 7.460 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 1.77, sigma = 2.79 after rotation: sse = 1.77, sigma = 2.79 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 1.78, its var is 2.19 before Erosion-Dilatation 0.00% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...50 iterations mri_strip_skull: done peeling brain Brain Size = 1621383 voxels, voxel volume = 1.000 mm3 = 1621383 mmm3 = 1621.383 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 25.452000 mri_watershed stimesec 0.268000 mri_watershed ru_maxrss 837624 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 212899 mri_watershed ru_majflt 10 mri_watershed ru_nswap 0 mri_watershed ru_inblock 9968 mri_watershed ru_oublock 2528 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 43 mri_watershed ru_nivcsw 155 mri_watershed done cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration Fri May 19 21:15:35 IST 2017 /mnt/research/freesurfer_analysis/grp229/grp229/mri mri_em_register_cuda -rusage /mnt/research/freesurfer_analysis/grp229/grp229/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2012 NVIDIA Corporation Built on Fri_Sep_21_17:28:58_PDT_2012 Cuda compilation tools, release 5.0, V0.2.1221 Driver : 8.0 Runtime : 5.0 Acquiring CUDA device Using default device CUDA device: GeForce GT 610 setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register_cuda for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/usr/local/freesurfer/average/RB_all_2016-05-10.vc700.gca'... average std = 7.3 using min determinant for regularization = 5.3 0 singular and 841 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 6.3 or > 503.7 total sample mean = 78.8 (1011 zeros) ************************************************ spacing=8, using 2830 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2830, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=22.0 skull bounding box = (61, 60, 28) --> (198, 186, 199) using (107, 102, 114) as brain centroid... mean wm in atlas = 107, using box (90,87,93) --> (123, 117,135) to find MRI wm before smoothing, mri peak at 108 robust fit to distribution - 108 +- 4.5 after smoothing, mri peak at 108, scaling input intensities by 0.991 scaling channel 0 by 0.990741 initial log_p = -10565.734 ************************************************ First Search limited to translation only. ************************************************ max log p = -10538.556641 @ (0.000, 0.000, 0.000) max log p = -10016.867188 @ (-4.545, -4.545, -4.545) max log p = -10016.867188 @ (0.000, 0.000, 0.000) max log p = -9995.470703 @ (1.136, -1.136, 1.136) max log p = -9918.631836 @ (0.568, 0.568, 0.568) max log p = -9918.631836 @ (0.000, 0.000, 0.000) Found translation: (-2.8, -5.1, -2.8): log p = -3.505 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 1.000: max_log_p=-9142.727, old_max_log_p =-3.505 (thresh=-3.5) 1.07500 0.00000 0.00000 -12.55927; 0.00000 1.14016 0.13053 -36.68432; 0.00000 -0.15011 0.99144 16.75911; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.250: max_log_p=-8803.980, old_max_log_p =-9142.727 (thresh=-9133.6) 1.05371 -0.04005 0.02778 -9.70204; 0.03581 1.11722 0.12900 -36.43056; -0.03583 -0.15284 1.00949 17.91275; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.250: max_log_p=-8780.432, old_max_log_p =-8803.980 (thresh=-8795.2) 1.05428 -0.00366 0.03306 -14.81501; 0.00013 1.13319 0.16398 -37.54870; -0.03699 -0.18931 1.00473 24.92965; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.250: max_log_p=-8780.432, old_max_log_p =-8780.432 (thresh=-8771.7) 1.05428 -0.00366 0.03306 -14.81501; 0.00013 1.13319 0.16398 -37.54870; -0.03699 -0.18931 1.00473 24.92965; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.062: max_log_p=-8648.486, old_max_log_p =-8780.432 (thresh=-8771.7) 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** find_optimal_linear_xform: Starting reduction 0 find_optimal_linear_xform: Starting reduction 1 Result so far: scale 0.062: max_log_p=-8648.486, old_max_log_p =-8648.486 (thresh=-8639.8) 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2830 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; nsamples 2830 Quasinewton: input matrix 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.056 (old=-3.733) transform before final EM align: 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315557 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; nsamples 315557 Quasinewton: input matrix 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = 3.7 tol 0.000000 final transform: 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... mri_em_register utimesec 634.112000 mri_em_register stimesec 477.200000 mri_em_register ru_maxrss 693916 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 204496 mri_em_register ru_majflt 0 mri_em_register ru_nswap 0 mri_em_register ru_inblock 140152 mri_em_register ru_oublock 16 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 4119416 mri_em_register ru_nivcsw 78866 registration took 36 minutes and 34 seconds. #-------------------------------------- #@# CA Normalize Fri May 19 21:52:10 IST 2017 /mnt/research/freesurfer_analysis/grp229/grp229/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/usr/local/freesurfer/average/RB_all_2016-05-10.vc700.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=22.0 skull bounding box = (61, 60, 28) --> (198, 186, 199) using (107, 102, 114) as brain centroid... mean wm in atlas = 107, using box (90,87,93) --> (123, 117,135) to find MRI wm before smoothing, mri peak at 108 robust fit to distribution - 108 +- 4.5 after smoothing, mri peak at 108, scaling input intensities by 0.991 scaling channel 0 by 0.990741 using 246344 sample points... INFO: compute sample coordinates transform 1.05707 -0.01950 0.01420 -10.25889; 0.01797 1.13464 0.14760 -38.76688; -0.01977 -0.17118 1.01005 19.86926; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (131, 64, 32) --> (193, 165, 196) Left_Cerebral_White_Matter: limiting intensities to 94.0 --> 132.0 4 of 5413 (0.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 67, 31) --> (131, 167, 196) Right_Cerebral_White_Matter: limiting intensities to 95.0 --> 132.0 1 of 5341 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (132, 143, 59) --> (178, 180, 112) Left_Cerebellum_White_Matter: limiting intensities to 94.0 --> 132.0 0 of 93 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (89, 143, 56) --> (131, 180, 112) Right_Cerebellum_White_Matter: limiting intensities to 89.0 --> 132.0 0 of 85 (0.0%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (115, 133, 94) --> (147, 195, 123) Brain_Stem: limiting intensities to 88.0 --> 132.0 0 of 48 (0.0%) samples deleted using 10980 total control points for intensity normalization... bias field = 0.981 +- 0.038 114 of 10975 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (131, 64, 32) --> (193, 165, 196) Left_Cerebral_White_Matter: limiting intensities to 89.0 --> 132.0 4 of 5897 (0.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 67, 31) --> (131, 167, 196) Right_Cerebral_White_Matter: limiting intensities to 90.0 --> 132.0 2 of 5867 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (132, 143, 59) --> (178, 180, 112) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 1 of 197 (0.5%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (89, 143, 56) --> (131, 180, 112) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 9 of 116 (7.8%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (115, 133, 94) --> (147, 195, 123) Brain_Stem: limiting intensities to 88.0 --> 132.0 53 of 119 (44.5%) samples deleted using 12196 total control points for intensity normalization... bias field = 1.030 +- 0.036 36 of 12030 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (131, 64, 32) --> (193, 165, 196) Left_Cerebral_White_Matter: limiting intensities to 89.0 --> 132.0 3 of 5865 (0.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (69, 67, 31) --> (131, 167, 196) Right_Cerebral_White_Matter: limiting intensities to 90.0 --> 132.0 3 of 5794 (0.1%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (132, 143, 59) --> (178, 180, 112) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 85 of 282 (30.1%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (89, 143, 56) --> (131, 180, 112) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 49 of 179 (27.4%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (115, 133, 94) --> (147, 195, 123) Brain_Stem: limiting intensities to 88.0 --> 132.0 148 of 197 (75.1%) samples deleted using 12317 total control points for intensity normalization... bias field = 1.027 +- 0.032 28 of 11875 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 13 seconds. #-------------------------------------- #@# CA Reg Fri May 19 21:53:23 IST 2017 /mnt/research/freesurfer_analysis/grp229/grp229/mri mri_ca_register_cuda -rusage /mnt/research/freesurfer_analysis/grp229/grp229/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /usr/local/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2012 NVIDIA Corporation Built on Fri_Sep_21_17:28:58_PDT_2012 Cuda compilation tools, release 5.0, V0.2.1221 Driver : 8.0 Runtime : 5.0 Acquiring CUDA device Using default device CUDA device: GeForce GT 610 not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register_cuda for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/usr/local/freesurfer/average/RB_all_2016-05-10.vc700.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.24 (predicted orig area = 6.5) freeing gibbs priors...done. average std[0] = 5.0 AllocateHost: Warning - not thread safe! RecvAll: Did not reset gca in dst GCAMcopyNodePositions: On GPU RecvAll: Did not reset gca in dst GCAMcopyNodePositions: On GPU RecvAll: Did not reset gca in dst GCAMcopyNodePositions: On GPU RecvAll: Did not reset gca in dst RecvAll: Did not reset gca in dst RecvAll: Did not reset gca in dst GCAMcopyNodePositions: On GPU RecvAll: Did not reset gca in dst RecvAll: Did not reset gca in dst RecvAll: Did not reset gca in dst RecvAll: Did not reset gca in dst label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.762, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6420.84 ms (avg) 6420.84 ms (tot) 0001: dt=117.990524, rms=0.720 (5.542%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6417.55 ms (avg) 6417.55 ms (tot) 0002: dt=87.828163, rms=0.713 (0.893%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6414.8 ms (avg) 6414.8 ms (tot) 0003: dt=352.500397, rms=0.697 (2.351%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6411.58 ms (avg) 6411.58 ms (tot) 0004: dt=43.840000, rms=0.694 (0.455%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6399.48 ms (avg) 6399.48 ms (tot) 0005: dt=73.984001, rms=0.693 (0.133%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0006: dt=73.984001, rms=0.691 (0.255%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0007: dt=73.984001, rms=0.688 (0.398%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0008: dt=73.984001, rms=0.685 (0.446%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0009: dt=73.984001, rms=0.683 (0.355%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0010: dt=73.984001, rms=0.680 (0.365%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0011: dt=73.984001, rms=0.677 (0.490%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0012: dt=73.984001, rms=0.674 (0.350%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0013: dt=73.984001, rms=0.673 (0.253%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0014: dt=73.984001, rms=0.671 (0.177%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0015: dt=73.984001, rms=0.670 (0.184%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0016: dt=73.984001, rms=0.669 (0.221%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0017: dt=73.984001, rms=0.668 (0.180%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0018: dt=73.984001, rms=0.667 (0.066%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0019: dt=73.984001, rms=0.666 (0.093%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0020: dt=73.984001, rms=0.665 (0.211%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0021: dt=73.984001, rms=0.663 (0.271%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0022: dt=73.984001, rms=0.662 (0.197%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0023: dt=73.984001, rms=0.661 (0.143%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0024: dt=73.984001, rms=0.660 (0.096%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0025: dt=73.984001, rms=0.659 (0.218%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0026: dt=73.984001, rms=0.657 (0.228%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0027: dt=73.984001, rms=0.656 (0.167%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0028: dt=73.984001, rms=0.655 (0.150%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0029: dt=73.984001, rms=0.654 (0.173%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0030: dt=73.984001, rms=0.654 (0.084%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0031: dt=73.984001, rms=0.653 (0.075%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6408.08 ms (avg) 6408.08 ms (tot) 0032: dt=295.936005, rms=0.653 (0.080%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6403.83 ms (avg) 6403.83 ms (tot) 0033: dt=129.472000, rms=0.652 (0.044%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0034: dt=129.472000, rms=0.652 (-0.153%), neg=0, invalid=762 RecvAll: Did not reset gca in dst blurring input image with Gaussian with sigma=0.500... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.652, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6070.99 ms (avg) 6070.99 ms (tot) 0035: dt=0.000000, rms=0.652 (0.000%), neg=0, invalid=762 RecvAll: Did not reset gca in dst setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.657, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6433.62 ms (avg) 6433.62 ms (tot) 0036: dt=161.230774, rms=0.651 (0.841%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6044.51 ms (avg) 6044.51 ms (tot) 0037: dt=41.656803, rms=0.642 (1.331%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6022.37 ms (avg) 6022.37 ms (tot) 0038: dt=9.072001, rms=0.642 (0.075%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0039: dt=9.072001, rms=0.642 (0.047%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0040: dt=9.072001, rms=0.641 (0.067%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0041: dt=9.072001, rms=0.641 (0.067%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0042: dt=9.072001, rms=0.640 (0.155%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0043: dt=9.072001, rms=0.638 (0.260%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0044: dt=9.072001, rms=0.636 (0.346%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0045: dt=9.072001, rms=0.634 (0.362%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0046: dt=9.072001, rms=0.631 (0.341%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0047: dt=9.072001, rms=0.630 (0.292%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0048: dt=9.072001, rms=0.628 (0.271%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0049: dt=9.072001, rms=0.626 (0.235%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0050: dt=9.072001, rms=0.625 (0.217%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0051: dt=9.072001, rms=0.624 (0.202%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0052: dt=9.072001, rms=0.622 (0.211%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0053: dt=9.072001, rms=0.621 (0.245%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0054: dt=9.072001, rms=0.619 (0.253%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0055: dt=9.072001, rms=0.618 (0.239%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0056: dt=9.072001, rms=0.616 (0.236%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0057: dt=9.072001, rms=0.615 (0.204%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0058: dt=9.072001, rms=0.614 (0.178%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0059: dt=9.072001, rms=0.613 (0.173%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0060: dt=9.072001, rms=0.612 (0.151%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0061: dt=9.072001, rms=0.611 (0.136%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0062: dt=9.072001, rms=0.610 (0.136%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0063: dt=9.072001, rms=0.610 (0.127%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0064: dt=9.072001, rms=0.609 (0.125%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0065: dt=9.072001, rms=0.608 (0.130%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0066: dt=9.072001, rms=0.607 (0.129%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0067: dt=9.072001, rms=0.607 (0.117%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0068: dt=9.072001, rms=0.606 (0.104%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6780.65 ms (avg) 6780.65 ms (tot) 0069: dt=36.288002, rms=0.606 (0.010%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0070: dt=36.288002, rms=0.606 (0.038%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0071: dt=36.288002, rms=0.605 (0.060%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0072: dt=36.288002, rms=0.605 (0.054%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0073: dt=36.288002, rms=0.604 (0.085%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0074: dt=36.288002, rms=0.604 (0.048%), neg=0, invalid=762 RecvAll: Did not reset gca in dst blurring input image with Gaussian with sigma=0.500... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.604, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6771.12 ms (avg) 6771.12 ms (tot) 0075: dt=145.152008, rms=0.602 (0.385%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6439.16 ms (avg) 6439.16 ms (tot) 0076: dt=20.736000, rms=0.602 (0.027%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0077: dt=20.736000, rms=0.602 (0.020%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0078: dt=20.736000, rms=0.601 (0.047%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0079: dt=20.736000, rms=0.601 (0.063%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0080: dt=20.736000, rms=0.600 (0.058%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0081: dt=20.736000, rms=0.600 (0.067%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0082: dt=20.736000, rms=0.600 (0.048%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6435.35 ms (avg) 6435.35 ms (tot) 0083: dt=124.416000, rms=0.599 (0.158%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6032.16 ms (avg) 6032.16 ms (tot) 0084: dt=9.072001, rms=0.599 (0.009%), neg=0, invalid=762 RecvAll: Did not reset gca in dst setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.614, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6081.63 ms (avg) 6081.63 ms (tot) 0085: dt=6.400000, rms=0.614 (0.068%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6036.94 ms (avg) 6036.94 ms (tot) 0086: dt=6.400000, rms=0.613 (0.036%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0087: dt=6.400000, rms=0.613 (0.003%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0088: dt=6.400000, rms=0.613 (-0.057%), neg=0, invalid=762 RecvAll: Did not reset gca in dst blurring input image with Gaussian with sigma=0.500... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.613, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6419.21 ms (avg) 6419.21 ms (tot) 0089: dt=0.004688, rms=0.613 (0.000%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6027.24 ms (avg) 6027.24 ms (tot) 0090: dt=0.000000, rms=0.613 (0.000%), neg=0, invalid=762 RecvAll: Did not reset gca in dst setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.652, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6031.81 ms (avg) 6031.81 ms (tot) 0091: dt=5.133758, rms=0.645 (1.206%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5690.42 ms (avg) 5690.42 ms (tot) 0092: dt=0.216000, rms=0.645 (-0.003%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0093: dt=0.216000, rms=0.645 (0.001%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0094: dt=0.216000, rms=0.645 (0.000%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0095: dt=0.216000, rms=0.645 (-0.010%), neg=0, invalid=762 RecvAll: Did not reset gca in dst blurring input image with Gaussian with sigma=0.500... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.645, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5977.94 ms (avg) 5977.94 ms (tot) 0096: dt=0.000703, rms=0.645 (0.000%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6030.72 ms (avg) 6030.72 ms (tot) 0097: dt=0.000703, rms=0.645 (0.000%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0098: dt=0.000703, rms=0.645 (0.001%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0099: dt=0.000703, rms=0.645 (-0.000%), neg=0, invalid=762 RecvAll: Did not reset gca in dst setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.695, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5686.14 ms (avg) 5686.14 ms (tot) 0100: dt=0.768000, rms=0.693 (0.265%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5699.47 ms (avg) 5699.47 ms (tot) 0101: dt=1.280000, rms=0.691 (0.293%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5663 ms (avg) 5663 ms (tot) 0102: dt=1.536000, rms=0.690 (0.205%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0103: dt=1.536000, rms=0.689 (0.011%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0104: dt=1.536000, rms=0.690 (-0.074%), neg=0, invalid=762 RecvAll: Did not reset gca in dst blurring input image with Gaussian with sigma=0.500... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.690, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5663.96 ms (avg) 5663.96 ms (tot) 0105: dt=0.804124, rms=0.688 (0.236%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5651.32 ms (avg) 5651.32 ms (tot) 0106: dt=1.024000, rms=0.688 (0.046%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0107: dt=1.024000, rms=0.688 (0.005%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0108: dt=1.024000, rms=0.687 (-0.022%), neg=0, invalid=762 RecvAll: Did not reset gca in dst resetting metric properties... GCAMcopyNodePositions: On GPU RecvAll: Did not reset gca in dst GCAMcopyNodePositions: On GPU RecvAll: Did not reset gca in dst RecvAll: Did not reset gca in dst RecvAll: Did not reset gca in dst setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.654, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5637.63 ms (avg) 5637.63 ms (tot) 0109: dt=0.448000, rms=0.639 (2.376%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 4909.14 ms (avg) 4909.14 ms (tot) 0110: dt=0.000000, rms=0.639 (0.003%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0111: dt=0.050000, rms=0.639 (-0.344%), neg=0, invalid=762 RecvAll: Did not reset gca in dst blurring input image with Gaussian with sigma=0.500... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.639, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 4892.44 ms (avg) 4892.44 ms (tot) 0112: dt=0.000000, rms=0.639 (0.000%), neg=0, invalid=762 RecvAll: Did not reset gca in dst renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10027 (20) mri peak = 0.10562 ( 8) Left_Lateral_Ventricle (4): linear fit = 0.32 x + 0.0 (683 voxels, overlap=0.020) Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (683 voxels, peak = 6), gca=8.0 gca peak = 0.15565 (16) mri peak = 0.13319 (11) Right_Lateral_Ventricle (43): linear fit = 0.44 x + 0.0 (795 voxels, overlap=0.111) Right_Lateral_Ventricle (43): linear fit = 0.44 x + 0.0 (795 voxels, peak = 7), gca=7.0 gca peak = 0.26829 (96) mri peak = 0.10829 (101) Right_Pallidum (52): linear fit = 1.05 x + 0.0 (877 voxels, overlap=0.783) Right_Pallidum (52): linear fit = 1.05 x + 0.0 (877 voxels, peak = 101), gca=101.3 gca peak = 0.20183 (93) mri peak = 0.10077 (101) Left_Pallidum (13): linear fit = 1.05 x + 0.0 (864 voxels, overlap=0.801) Left_Pallidum (13): linear fit = 1.05 x + 0.0 (864 voxels, peak = 98), gca=98.1 gca peak = 0.21683 (55) mri peak = 0.07434 (58) Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (878 voxels, overlap=0.992) Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (878 voxels, peak = 57), gca=57.5 gca peak = 0.30730 (58) mri peak = 0.08535 (62) Left_Hippocampus (17): linear fit = 1.04 x + 0.0 (762 voxels, overlap=0.994) Left_Hippocampus (17): linear fit = 1.04 x + 0.0 (762 voxels, peak = 61), gca=60.6 gca peak = 0.11430 (101) mri peak = 0.14430 (103) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (65618 voxels, overlap=0.687) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (65618 voxels, peak = 105), gca=104.5 gca peak = 0.12076 (102) mri peak = 0.12169 (105) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (67092 voxels, overlap=0.656) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (67092 voxels, peak = 105), gca=104.5 gca peak = 0.14995 (59) mri peak = 0.03195 (56) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (27492 voxels, overlap=0.986) Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (27492 voxels, peak = 60), gca=60.5 gca peak = 0.15082 (58) mri peak = 0.03201 (60) Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (27306 voxels, overlap=0.989) Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (27306 voxels, peak = 59), gca=59.4 gca peak = 0.14161 (67) mri peak = 0.09959 (78) Right_Caudate (50): linear fit = 1.13 x + 0.0 (825 voxels, overlap=0.202) Right_Caudate (50): linear fit = 1.13 x + 0.0 (825 voxels, peak = 76), gca=76.0 gca peak = 0.15243 (71) mri peak = 0.07059 (80) Left_Caudate (11): linear fit = 1.09 x + 0.0 (1051 voxels, overlap=0.839) Left_Caudate (11): linear fit = 1.09 x + 0.0 (1051 voxels, peak = 77), gca=77.0 gca peak = 0.13336 (57) mri peak = 0.04913 (63) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (25810 voxels, overlap=0.745) Left_Cerebellum_Cortex (8): linear fit = 1.12 x + 0.0 (25810 voxels, peak = 64), gca=63.6 gca peak = 0.13252 (56) mri peak = 0.04009 (62) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (29831 voxels, overlap=0.670) Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (29831 voxels, peak = 62), gca=62.4 gca peak = 0.18181 (84) mri peak = 0.10627 (88) Left_Cerebellum_White_Matter (7): linear fit = 1.07 x + 0.0 (9483 voxels, overlap=0.526) Left_Cerebellum_White_Matter (7): linear fit = 1.07 x + 0.0 (9483 voxels, peak = 89), gca=89.5 gca peak = 0.20573 (83) mri peak = 0.09167 (90) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (8065 voxels, overlap=0.679) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (8065 voxels, peak = 89), gca=89.2 gca peak = 0.21969 (57) mri peak = 0.10202 (60) Left_Amygdala (18): linear fit = 1.04 x + 0.0 (463 voxels, overlap=0.989) Left_Amygdala (18): linear fit = 1.04 x + 0.0 (463 voxels, peak = 60), gca=59.6 gca peak = 0.39313 (56) mri peak = 0.10010 (58) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (509 voxels, overlap=0.954) Right_Amygdala (54): linear fit = 1.04 x + 0.0 (509 voxels, peak = 59), gca=58.5 gca peak = 0.14181 (85) mri peak = 0.05731 (89) Left_Thalamus_Proper (10): linear fit = 1.07 x + 0.0 (5159 voxels, overlap=0.805) Left_Thalamus_Proper (10): linear fit = 1.07 x + 0.0 (5159 voxels, peak = 91), gca=90.5 gca peak = 0.11978 (83) mri peak = 0.05561 (90) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (4148 voxels, overlap=0.805) Right_Thalamus_Proper (49): linear fit = 1.08 x + 0.0 (4148 voxels, peak = 89), gca=89.2 gca peak = 0.13399 (79) mri peak = 0.06324 (80) Left_Putamen (12): linear fit = 1.04 x + 0.0 (2167 voxels, overlap=0.949) Left_Putamen (12): linear fit = 1.04 x + 0.0 (2167 voxels, peak = 83), gca=82.6 gca peak = 0.14159 (79) mri peak = 0.05809 (84) Right_Putamen (51): linear fit = 1.10 x + 0.0 (2376 voxels, overlap=0.915) Right_Putamen (51): linear fit = 1.10 x + 0.0 (2376 voxels, peak = 87), gca=86.5 gca peak = 0.10025 (80) mri peak = 0.11100 (83) Brain_Stem (16): linear fit = 1.07 x + 0.0 (11834 voxels, overlap=0.401) Brain_Stem (16): linear fit = 1.07 x + 0.0 (11834 voxels, peak = 85), gca=85.2 gca peak = 0.13281 (86) mri peak = 0.06706 (90) Right_VentralDC (60): linear fit = 1.09 x + 0.0 (1214 voxels, overlap=0.667) Right_VentralDC (60): linear fit = 1.09 x + 0.0 (1214 voxels, peak = 93), gca=93.3 gca peak = 0.12801 (89) mri peak = 0.07196 (88) Left_VentralDC (28): linear fit = 1.02 x + 0.0 (1331 voxels, overlap=0.750) Left_VentralDC (28): linear fit = 1.02 x + 0.0 (1331 voxels, peak = 91), gca=91.2 gca peak = 0.20494 (23) mri peak = 0.22222 (24) gca peak = 0.15061 (21) mri peak = 0.05367 ( 6) Fourth_Ventricle (15): linear fit = 0.62 x + 0.0 (418 voxels, overlap=0.480) Fourth_Ventricle (15): linear fit = 0.62 x + 0.0 (418 voxels, peak = 13), gca=12.9 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.18056 (32) gca peak Left_Thalamus = 0.64095 (94) gca peak Third_Ventricle = 0.20494 (23) gca peak Fourth_Ventricle = 0.15061 (21) gca peak CSF = 0.20999 (34) gca peak Left_Accumbens_area = 0.39030 (62) gca peak Left_undetermined = 0.95280 (25) gca peak Left_vessel = 0.67734 (53) gca peak Left_choroid_plexus = 0.09433 (44) gca peak Right_Inf_Lat_Vent = 0.23544 (26) gca peak Right_Accumbens_area = 0.30312 (64) gca peak Right_vessel = 0.46315 (51) gca peak Right_choroid_plexus = 0.14086 (44) gca peak Fifth_Ventricle = 0.51669 (36) gca peak WM_hypointensities = 0.09722 (76) gca peak non_WM_hypointensities = 0.11899 (47) gca peak Optic_Chiasm = 0.39033 (72) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.04 x + 0.0 estimating mean wm scale to be 1.03 x + 0.0 estimating mean csf scale to be 0.42 x + 0.0 saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.650, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6404.67 ms (avg) 6404.67 ms (tot) 0113: dt=186.231766, rms=0.642 (1.238%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6436.54 ms (avg) 6436.54 ms (tot) 0114: dt=92.480003, rms=0.640 (0.224%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6044.25 ms (avg) 6044.25 ms (tot) 0115: dt=129.472000, rms=0.638 (0.409%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6412.13 ms (avg) 6412.13 ms (tot) 0116: dt=32.368000, rms=0.637 (0.058%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6404.82 ms (avg) 6404.82 ms (tot) 0117: dt=129.472000, rms=0.636 (0.135%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6424.3 ms (avg) 6424.3 ms (tot) 0118: dt=295.936005, rms=0.634 (0.319%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6422.04 ms (avg) 6422.04 ms (tot) 0119: dt=32.368000, rms=0.634 (0.120%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6454.1 ms (avg) 6454.1 ms (tot) 0120: dt=32.368000, rms=0.633 (0.031%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0121: dt=32.368000, rms=0.633 (0.019%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0122: dt=32.368000, rms=0.633 (0.029%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0123: dt=32.368000, rms=0.633 (0.047%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0124: dt=32.368000, rms=0.632 (0.076%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0125: dt=32.368000, rms=0.632 (0.107%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0126: dt=32.368000, rms=0.631 (0.114%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0127: dt=32.368000, rms=0.630 (0.108%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0128: dt=32.368000, rms=0.630 (0.093%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0129: dt=32.368000, rms=0.629 (0.075%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0130: dt=32.368000, rms=0.629 (0.073%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0131: dt=32.368000, rms=0.628 (0.070%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0132: dt=32.368000, rms=0.628 (0.080%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0133: dt=32.368000, rms=0.627 (0.088%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0134: dt=32.368000, rms=0.627 (0.086%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0135: dt=32.368000, rms=0.626 (0.071%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0136: dt=32.368000, rms=0.626 (0.054%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0137: dt=32.368000, rms=0.626 (0.048%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0138: dt=32.368000, rms=0.625 (0.042%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0139: dt=32.368000, rms=0.625 (0.042%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0140: dt=32.368000, rms=0.625 (0.043%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0141: dt=32.368000, rms=0.624 (0.058%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0142: dt=32.368000, rms=0.624 (0.049%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0143: dt=32.368000, rms=0.624 (0.049%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0144: dt=32.368000, rms=0.624 (0.044%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0145: dt=32.368000, rms=0.623 (0.037%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0146: dt=32.368000, rms=0.623 (0.037%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0147: dt=32.368000, rms=0.623 (0.040%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0148: dt=32.368000, rms=0.623 (0.033%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0149: dt=32.368000, rms=0.622 (0.039%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0150: dt=32.368000, rms=0.622 (0.044%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0151: dt=32.368000, rms=0.622 (0.041%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0152: dt=32.368000, rms=0.622 (0.038%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0153: dt=32.368000, rms=0.621 (0.040%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0154: dt=32.368000, rms=0.621 (0.029%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0155: dt=32.368000, rms=0.621 (0.026%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0156: dt=32.368000, rms=0.621 (0.024%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0157: dt=32.368000, rms=0.621 (0.023%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6438.66 ms (avg) 6438.66 ms (tot) 0158: dt=369.920013, rms=0.620 (0.056%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6393.3 ms (avg) 6393.3 ms (tot) 0159: dt=23.120001, rms=0.620 (-0.002%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0160: dt=23.120001, rms=0.620 (0.007%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0161: dt=23.120001, rms=0.620 (-0.012%), neg=0, invalid=762 RecvAll: Did not reset gca in dst blurring input image with Gaussian with sigma=0.500... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.620, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5991.01 ms (avg) 5991.01 ms (tot) 0162: dt=32.368000, rms=0.620 (0.018%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6508.46 ms (avg) 6508.46 ms (tot) 0163: dt=73.984001, rms=0.620 (0.019%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6463.24 ms (avg) 6463.24 ms (tot) 0164: dt=369.920013, rms=0.619 (0.142%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6545.88 ms (avg) 6545.88 ms (tot) 0165: dt=32.368000, rms=0.619 (0.027%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0166: dt=32.368000, rms=0.619 (0.003%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0167: dt=32.368000, rms=0.619 (-0.008%), neg=0, invalid=762 RecvAll: Did not reset gca in dst setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... GCAMregisterPipelineAndComputeRMS: On GPU 0000: dt=0.000, rms=0.619, neg=0, invalid=0 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6492.93 ms (avg) 6492.93 ms (tot) 0168: dt=145.152008, rms=0.613 (1.001%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6546.11 ms (avg) 6546.11 ms (tot) 0169: dt=62.875000, rms=0.608 (0.872%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6145.85 ms (avg) 6145.85 ms (tot) 0170: dt=40.888889, rms=0.606 (0.279%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6482.67 ms (avg) 6482.67 ms (tot) 0171: dt=124.416000, rms=0.602 (0.598%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5743.01 ms (avg) 5743.01 ms (tot) 0172: dt=17.230770, rms=0.601 (0.282%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6164.46 ms (avg) 6164.46 ms (tot) 0173: dt=145.152008, rms=0.598 (0.510%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6120.89 ms (avg) 6120.89 ms (tot) 0174: dt=36.288002, rms=0.596 (0.344%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6137.49 ms (avg) 6137.49 ms (tot) 0175: dt=20.736000, rms=0.595 (0.068%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6547.37 ms (avg) 6547.37 ms (tot) 0176: dt=331.776001, rms=0.591 (0.714%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5634.53 ms (avg) 5634.53 ms (tot) 0177: dt=18.115702, rms=0.588 (0.439%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6094.39 ms (avg) 6094.39 ms (tot) 0178: dt=124.416000, rms=0.587 (0.262%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6546.38 ms (avg) 6546.38 ms (tot) 0179: dt=36.288002, rms=0.586 (0.169%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5742.1 ms (avg) 5742.1 ms (tot) 0180: dt=82.944000, rms=0.585 (0.128%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6529.43 ms (avg) 6529.43 ms (tot) 0181: dt=31.104000, rms=0.585 (0.103%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6126.36 ms (avg) 6126.36 ms (tot) 0182: dt=124.416000, rms=0.584 (0.174%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6551.19 ms (avg) 6551.19 ms (tot) 0183: dt=25.920000, rms=0.583 (0.125%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6018.81 ms (avg) 6018.81 ms (tot) 0184: dt=145.152008, rms=0.582 (0.219%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6144.31 ms (avg) 6144.31 ms (tot) 0185: dt=20.736000, rms=0.581 (0.072%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6521.12 ms (avg) 6521.12 ms (tot) 0186: dt=103.680000, rms=0.580 (0.124%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6137.84 ms (avg) 6137.84 ms (tot) 0187: dt=20.736000, rms=0.580 (0.064%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 6144.7 ms (avg) 6144.7 ms (tot) 0188: dt=124.416000, rms=0.579 (0.159%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst FindOptimalTimestep: Complete in 5991.9 ms (avg) 5991.9 ms (tot) 0189: dt=9.072001, rms=0.579 (0.050%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0190: dt=9.072001, rms=0.579 (0.027%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0191: dt=9.072001, rms=0.579 (0.010%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0192: dt=9.072001, rms=0.579 (0.012%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0193: dt=9.072001, rms=0.578 (0.032%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0194: dt=9.072001, rms=0.578 (0.067%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0195: dt=9.072001, rms=0.578 (0.072%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0196: dt=9.072001, rms=0.577 (0.063%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0197: dt=9.072001, rms=0.577 (0.062%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0198: dt=9.072001, rms=0.576 (0.070%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0199: dt=9.072001, rms=0.576 (0.068%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0200: dt=9.072001, rms=0.576 (0.071%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0201: dt=9.072001, rms=0.575 (0.077%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0202: dt=9.072001, rms=0.575 (0.081%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0203: dt=9.072001, rms=0.574 (0.088%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0204: dt=9.072001, rms=0.574 (0.085%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0205: dt=9.072001, rms=0.573 (0.078%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0206: dt=9.072001, rms=0.573 (0.080%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0207: dt=9.072001, rms=0.572 (0.075%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0208: dt=9.072001, rms=0.572 (0.082%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0209: dt=9.072001, rms=0.571 (0.079%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0210: dt=9.072001, rms=0.571 (0.072%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0211: dt=9.072001, rms=0.571 (0.077%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0212: dt=9.072001, rms=0.570 (0.066%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0213: dt=9.072001, rms=0.570 (0.068%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0214: dt=9.072001, rms=0.569 (0.072%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0215: dt=9.072001, rms=0.569 (0.065%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0216: dt=9.072001, rms=0.569 (0.064%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0217: dt=9.072001, rms=0.568 (0.062%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0218: dt=9.072001, rms=0.568 (0.060%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0219: dt=9.072001, rms=0.568 (0.059%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0220: dt=9.072001, rms=0.567 (0.059%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0221: dt=9.072001, rms=0.567 (0.055%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0222: dt=9.072001, rms=0.567 (0.055%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0223: dt=9.072001, rms=0.566 (0.052%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0224: dt=9.072001, rms=0.566 (0.055%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0225: dt=9.072001, rms=0.566 (0.050%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0226: dt=9.072001, rms=0.565 (0.051%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0227: dt=9.072001, rms=0.565 (0.047%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0228: dt=9.072001, rms=0.565 (0.047%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0229: dt=9.072001, rms=0.565 (0.047%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0230: dt=9.072001, rms=0.564 (0.050%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0231: dt=9.072001, rms=0.564 (0.048%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0232: dt=9.072001, rms=0.564 (0.048%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0233: dt=9.072001, rms=0.564 (0.039%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0234: dt=9.072001, rms=0.563 (0.042%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0235: dt=9.072001, rms=0.563 (0.038%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0236: dt=9.072001, rms=0.563 (0.037%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0237: dt=9.072001, rms=0.563 (0.039%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0238: dt=9.072001, rms=0.563 (0.038%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0239: dt=9.072001, rms=0.562 (0.037%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0240: dt=9.072001, rms=0.562 (0.036%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0241: dt=9.072001, rms=0.562 (0.038%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0242: dt=9.072001, rms=0.562 (0.031%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0243: dt=9.072001, rms=0.562 (0.035%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0244: dt=9.072001, rms=0.561 (0.031%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0245: dt=9.072001, rms=0.561 (0.028%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0246: dt=9.072001, rms=0.561 (0.039%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0247: dt=9.072001, rms=0.561 (0.029%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0248: dt=9.072001, rms=0.561 (0.032%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0249: dt=9.072001, rms=0.561 (0.028%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0250: dt=9.072001, rms=0.560 (0.031%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0251: dt=9.072001, rms=0.560 (0.031%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0252: dt=9.072001, rms=0.560 (0.028%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0253: dt=9.072001, rms=0.560 (0.033%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0254: dt=9.072001, rms=0.560 (0.030%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0255: dt=9.072001, rms=0.560 (0.026%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0256: dt=9.072001, rms=0.559 (0.028%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0257: dt=9.072001, rms=0.559 (0.028%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0258: dt=9.072001, rms=0.559 (0.027%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0259: dt=9.072001, rms=0.559 (0.028%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0260: dt=9.072001, rms=0.559 (0.025%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0261: dt=9.072001, rms=0.559 (0.027%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0262: dt=9.072001, rms=0.558 (0.024%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0263: dt=9.072001, rms=0.558 (0.026%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0264: dt=9.072001, rms=0.558 (0.025%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0265: dt=9.072001, rms=0.558 (0.026%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0266: dt=9.072001, rms=0.558 (0.020%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0267: dt=9.072001, rms=0.558 (0.020%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0268: dt=9.072001, rms=0.558 (0.025%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0269: dt=9.072001, rms=0.558 (0.026%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0270: dt=9.072001, rms=0.557 (0.021%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution PutOnGPU: Did not reset gca in dst 0271: dt=9.072001, rms=0.557 (0.020%), neg=0, invalid=762 LabelTerm: Did not call MRIsetResolution